Factsheet for PGSC0003DMT400028567

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084660.1.1	Tomato	cytosol, extracellular	97.12	97.12
PGSC0003DMT400023061	Potato	cytosol	88.49	88.49
PGSC0003DMT400071339	Potato	cytosol	87.05	84.62
PGSC0003DMT400008913	Potato	cytosol	82.73	83.94
GSMUA_Achr10P...	Banana	cytosol	79.14	83.33
PGSC0003DMT400087280	Potato	cytosol	81.3	83.09
EER95084	Sorghum	cytosol	79.86	79.86
Os05t0113400-01	Rice	cytosol, extracellular, plastid	79.14	79.71
EES17589	Sorghum	cytosol	78.42	78.42
HORVU0Hr1G000200.1	Barley	cytosol	78.42	78.42
GSMUA_Achr6P15320_001	Banana	cytosol	73.38	77.27
Zm00001d035629_P001	Maize	cytosol	75.54	75.54
PGSC0003DMT400076911	Potato	cytosol	74.1	74.64
Zm00001d035625_P001	Maize	cytosol	69.78	74.05
PGSC0003DMT400037205	Potato	cytosol	69.78	70.8
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.73	69.28
VIT_10s0092g00330.t01	Wine grape	cytosol	45.32	69.23
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	82.01	68.67
PGSC0003DMT400000464	Potato	cytosol	67.63	68.61
PGSC0003DMT400026582	Potato	mitochondrion	68.35	68.35
VIT_08s0040g03360.t01	Wine grape	plastid	89.21	65.61
VIT_11s0103g00260.t01	Wine grape	cytosol	55.4	65.25
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	83.45	62.7
PGSC0003DMT400015865	Potato	cytosol	59.71	58.04
PGSC0003DMT400044218	Potato	cytosol	59.71	57.24
GSMUA_Achr10P...	Banana	endoplasmic reticulum	80.58	51.61
PGSC0003DMT400026656	Potato	mitochondrion	61.87	47.51
GSMUA_Achr2P16220_001	Banana	cytosol	83.45	41.73

Protein Annotations

EntrezGene:102596934	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M1ARB2	PFAM:PF00241	EnsemblPlantsGene:PGSC0003DMG400010998
PGSC:PGSC0003DMG400010998	EnsemblPlants:PGSC0003DMT400028567	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102
SUPFAM:SSF55753	UniParc:UPI000296EB84	RefSeq:XP_006339034.1	SEG:seg	:	:

Description

Actin depolymerizing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400010998]

Coordinates

chr10:-:54473765..54476483

Molecular Weight (calculated)

16089.1 Da

IEP (calculated)

5.332

GRAVY (calculated)

-0.491

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLTFFE LKTKRSHRFI VFKIEEKQKQ VVVEKVGEPT QSYEDFAESL PADECRYAVY DFDFVTEENC QKSRIFFIAW SPDTARVRSK
101: MIYASSKDRF KRELDGIQIE LQATDPTEMG LDVIKSRVN

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.