Factsheet for PGSC0003DMT400037205

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025750.2.1	Tomato	cytosol	95.62	95.62
Bra029119.1-P	Field mustard	cytosol	84.67	89.23
Bra028304.1-P	Field mustard	cytosol	83.94	88.46
CDY31909	Canola	cytosol	83.21	87.69
AT5G52360.1	Thale cress	cytosol	87.59	87.59
AT4G25590.1	Thale cress	cytosol	86.13	86.13
CDX94438	Canola	cytosol	81.02	86.05
CDY52365	Canola	cytosol	81.02	86.05
CDX89411	Canola	cytosol	80.29	85.27
CDY32581	Canola	cytosol	33.58	85.19
Bra019151.1-P	Field mustard	cytosol	79.56	84.5
Bra010456.1-P	Field mustard	cytosol	84.67	83.45
PGSC0003DMT400076911	Potato	cytosol	82.48	81.88
GSMUA_Achr4P29400_001	Banana	cytosol	56.93	79.59
Bra013901.1-P	Field mustard	cytosol	83.94	75.66
PGSC0003DMT400000464	Potato	cytosol	75.18	75.18
CDY54088	Canola	cytosol	51.09	72.16
PGSC0003DMT400071339	Potato	cytosol	73.72	70.63
PGSC0003DMT400026582	Potato	mitochondrion	71.53	70.5
CDY72027	Canola	cytosol	54.74	70.09
PGSC0003DMT400028567	Potato	cytosol	70.8	69.78
PGSC0003DMT400087280	Potato	cytosol	68.61	69.12
PGSC0003DMT400008913	Potato	cytosol	68.61	68.61
PGSC0003DMT400023061	Potato	cytosol	69.34	68.35
CDX92721	Canola	mitochondrion	83.21	63.69
PGSC0003DMT400015865	Potato	cytosol	57.66	55.24
PGSC0003DMT400044218	Potato	cytosol	56.93	53.79
CDY50194	Canola	cytosol	83.21	53.52
PGSC0003DMT400026656	Potato	mitochondrion	60.58	45.86

Protein Annotations

EntrezGene:102593491	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M1B4Z8	PFAM:PF00241	EnsemblPlantsGene:PGSC0003DMG401014344
PGSC:PGSC0003DMG401014344	EnsemblPlants:PGSC0003DMT400037205	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF33	SMART:SM00102
SUPFAM:SSF55753	UniParc:UPI00029594CA	RefSeq:XP_006353297.1	:	:	:

Description

Pollen specific actin-depolymerizing factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG401014344]

Coordinates

chr3:-:43009498..43011172

Molecular Weight (calculated)

15901.9 Da

IEP (calculated)

4.854

GRAVY (calculated)

-0.441

Length

137 amino acids

Sequence
(BLAST)

001: MANAVSGTAV QDECKLKFLE LKAKRNYRFI IFKIDGQEVV VEKLGSPEEN YDDFANSLPP DECRYAVFDF DFITNENIQK SKIFFIAWSP ESSRVRMKMV
101: YASSKDRFKR ELDGIQVELQ ATEPSEMSFD LIKSRAY

Best Arabidopsis Sequence Match ( AT5G52360.1 )
(BLAST)

001: MANAASGMAV EDECKLKFLE LKAKRNYRFI IFRIDGQQVV VEKLGSPQEN YDDFTNYLPP NECRYAVYDF DFTTAENIQK SKIFFIAWSP DSSRVRMKMV
101: YASSKDRFKR ELDGIQVELQ ATDPSEMSLD IIKSRAL

Arabidopsis Description

ADF12ADF10 [Source:UniProtKB/TrEMBL;Acc:A0A178UBW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.