Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59880.1 | PGSC0003DMT400002331 | AT1G35670.1 | 19130088 |
| AT5G59880.1 | PGSC0003DMT400067082 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g005360.2.1 | Tomato | cytosol, extracellular, nucleus | 100.0 | 100.0 |
| KRH19714 | Soybean | nucleus | 87.59 | 86.33 |
| KRH36708 | Soybean | mitochondrion | 87.59 | 86.33 |
| KRH11708 | Soybean | mitochondrion | 86.86 | 85.61 |
| PGSC0003DMT400028567 | Potato | cytosol | 83.94 | 82.73 |
| Bra002522.1-P | Field mustard | cytosol | 81.75 | 80.58 |
| CDY31586 | Canola | cytosol | 77.37 | 80.3 |
| KRH32309 | Soybean | cytosol, nucleus | 83.94 | 79.86 |
| PGSC0003DMT400023061 | Potato | cytosol | 81.02 | 79.86 |
| AT5G59890.1 | Thale cress | cytosol | 81.02 | 79.86 |
| PGSC0003DMT400071339 | Potato | cytosol | 83.21 | 79.72 |
| Bra006686.1-P | Field mustard | cytosol | 75.91 | 78.79 |
| CDX71067 | Canola | cytosol | 75.91 | 78.79 |
| AT5G59880.1 | Thale cress | cytosol | 79.56 | 78.42 |
| PGSC0003DMT400087280 | Potato | cytosol | 77.37 | 77.94 |
| GSMUA_Achr10P... | Banana | cytosol | 72.99 | 75.76 |
| EER95084 | Sorghum | cytosol | 75.91 | 74.82 |
| PGSC0003DMT400076911 | Potato | cytosol | 74.45 | 73.91 |
| GSMUA_Achr6P15320_001 | Banana | cytosol | 70.8 | 73.48 |
| Bra020277.1-P | Field mustard | cytosol | 79.56 | 73.15 |
| Os05t0113400-01 | Rice | cytosol, extracellular, plastid | 72.99 | 72.46 |
| AT3G46010.2 | Thale cress | cytosol | 78.83 | 72.0 |
| CDY09242 | Canola | cytosol | 80.29 | 71.9 |
| Bra020276.1-P | Field mustard | cytosol | 79.56 | 71.24 |
| Bra006687.1-P | Field mustard | cytosol | 79.56 | 71.24 |
| CDX88730 | Canola | cytosol | 79.56 | 70.78 |
| AT3G46000.2 | Thale cress | cytosol | 79.56 | 69.87 |
| HORVU0Hr1G000200.1 | Barley | cytosol | 70.8 | 69.78 |
| PGSC0003DMT400037205 | Potato | cytosol | 68.61 | 68.61 |
| EES17589 | Sorghum | cytosol | 69.34 | 68.35 |
| CDX71068 | Canola | cytosol | 79.56 | 66.46 |
| CDX99133 | Canola | cytosol, plastid | 80.29 | 65.87 |
| Bra038266.1-P | Field mustard | cytosol | 80.29 | 65.87 |
| Zm00001d035625_P001 | Maize | cytosol | 62.77 | 65.65 |
| Zm00001d035629_P001 | Maize | cytosol | 66.42 | 65.47 |
| CDX86048 | Canola | cytosol, plastid | 79.56 | 65.27 |
| PGSC0003DMT400000464 | Potato | cytosol | 64.96 | 64.96 |
| GSMUA_Achr6P33310_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 78.1 | 64.46 |
| PGSC0003DMT400026582 | Potato | mitochondrion | 64.96 | 64.03 |
| GSMUA_Achr9P04050_001 | Banana | endoplasmic reticulum, extracellular | 77.37 | 63.86 |
| AT3G45990.1 | Thale cress | cytosol | 56.93 | 58.65 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 78.1 | 57.84 |
| CDX88731 | Canola | cytosol, plastid | 81.02 | 55.78 |
| PGSC0003DMT400015865 | Potato | cytosol | 55.47 | 53.15 |
| PGSC0003DMT400044218 | Potato | cytosol | 55.47 | 52.41 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 76.64 | 48.39 |
| CDX80216 | Canola | cytosol | 82.48 | 44.84 |
| PGSC0003DMT400026656 | Potato | mitochondrion | 59.12 | 44.75 |
| GSMUA_Achr2P16220_001 | Banana | cytosol | 77.37 | 38.13 |
Protein Annotations
| EntrezGene:102598836 | MapMan:20.2.2.8 | Gene3D:3.40.20.10 | InterPro:ADF-H | InterPro:ADF-H/Gelsolin-like_dom_sf | InterPro:ADF/Cofilin |
| GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015629 | GO:GO:0016043 |
| GO:GO:0030042 | InterPro:IPR002108 | InterPro:IPR029006 | UniProt:M0ZV99 | PFAM:PF00241 | EnsemblPlantsGene:PGSC0003DMG400003468 |
| PGSC:PGSC0003DMG400003468 | EnsemblPlants:PGSC0003DMT400008913 | PFscan:PS51263 | PANTHER:PTHR11913 | PANTHER:PTHR11913:SF50 | SMART:SM00102 |
| SUPFAM:SSF55753 | UniParc:UPI0002765B30 | RefSeq:XP_006367788.1 | : | : | : |
Description
Actin depolymerizing factor 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400003468]
Coordinates
chr6:-:5863897..5866752
Molecular Weight (calculated)
15848.0 Da
IEP (calculated)
6.519
GRAVY (calculated)
-0.350
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MANAASGMAV HDDCKLKFLE LKTKRAFRFI VFKIEEKQII VEKLGEPAES YEDFCTHLPA DECRYAVYDF DFLTKESVPK SRIFFIAWCP DTSKVRSKMI
101: YASSKDRFKR ELDGIQIELQ ATDPTEMGLD VFKSRAN
101: YASSKDRFKR ELDGIQIELQ ATDPTEMGLD VFKSRAN
001: MANAASGMAV HDDCKLKFME LKTKRTHRFI IYKIEELQKQ VIVEKIGEPG QTHEDLAASL PADECRYAIF DFDFVSSEGV PRSRIFFVAW SPDTARVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN
Arabidopsis Description
ADF3Actin-depolymerizing factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.