CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 25806999
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	KRG91803	AT1G35670.1	19130088
AT5G59880.1	KRH34983	AT1G35670.1	19130088
AT5G59880.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11708	Soybean	mitochondrion	99.28	99.28
KRH19714	Soybean	nucleus	89.93	89.93
PGSC0003DMT400008913	Potato	cytosol	86.33	87.59
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	86.33	87.59
AT5G59880.1	Thale cress	cytosol	82.73	82.73
AT5G59890.1	Thale cress	cytosol	82.73	82.73
Bra002522.1-P	Field mustard	cytosol	82.73	82.73
KRH32309	Soybean	cytosol, nucleus	85.61	82.64
CDY31586	Canola	cytosol	78.42	82.58
Bra006686.1-P	Field mustard	cytosol	76.98	81.06
CDX71067	Canola	cytosol	76.98	81.06
GSMUA_Achr10P...	Banana	cytosol	76.26	80.3
GSMUA_Achr6P15320_001	Banana	cytosol	74.1	78.03
Bra020277.1-P	Field mustard	cytosol	82.73	77.18
EER95084	Sorghum	cytosol	76.26	76.26
Os05t0113400-01	Rice	cytosol, extracellular, plastid	75.54	76.09
CDY09242	Canola	cytosol	82.73	75.16
Bra006687.1-P	Field mustard	cytosol	82.73	75.16
CDX88730	Canola	cytosol	82.73	74.68
AT3G46010.2	Thale cress	cytosol	80.58	74.67
KRH41156	Soybean	cytosol	69.78	74.62
Bra020276.1-P	Field mustard	cytosol	82.01	74.51
KRH27939	Soybean	cytosol	73.38	74.45
EES17589	Sorghum	cytosol	74.1	74.1
HORVU0Hr1G000200.1	Barley	cytosol	74.1	74.1
KRH77527	Soybean	cytosol	72.66	73.72
KRG91521	Soybean	cytosol	71.22	72.26
KRH35309	Soybean	cytosol	71.22	72.26
Zm00001d035629_P001	Maize	cytosol	71.94	71.94
Zm00001d035625_P001	Maize	cytosol	66.91	70.99
AT3G46000.2	Thale cress	cytosol	79.14	70.51
CDX71068	Canola	cytosol	82.73	70.12
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.58	67.47
Bra038266.1-P	Field mustard	cytosol	80.58	67.07
CDX99133	Canola	cytosol, plastid	80.58	67.07
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	79.86	66.87
CDX86048	Canola	cytosol, plastid	79.86	66.47
VIT_08s0040g03360.t01	Wine grape	plastid	87.05	64.02
KRH51874	Soybean	cytosol	52.52	62.39
KRH59855	Soybean	endoplasmic reticulum, extracellular	74.82	61.54
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	81.3	61.08
AT3G45990.1	Thale cress	cytosol	57.55	60.15
VIT_10s0092g00330.t01	Wine grape	cytosol	38.85	59.34
VIT_11s0103g00260.t01	Wine grape	cytosol	50.36	59.32
KRH29274	Soybean	cytosol	55.4	58.33
KRH51402	Soybean	cytosol	58.99	57.34
CDX88731	Canola	cytosol, plastid	82.01	57.29
KRG92420	Soybean	cytosol	59.71	56.08
KRH24296	Soybean	cytosol, plastid	57.55	55.94
KRG95660	Soybean	cytosol	58.27	55.48
KRH67374	Soybean	cytosol	57.55	54.79
KRH34385	Soybean	cytosol	58.27	54.73
GSMUA_Achr10P...	Banana	endoplasmic reticulum	79.86	51.15
CDX80216	Canola	cytosol	83.45	46.03
GSMUA_Achr2P16220_001	Banana	cytosol	80.58	40.29

Protein Annotations

EntrezGene:100813011	MapMan:20.2.2.8	Gene3D:3.40.20.10	EMBL:ACUP02005388	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	EnsemblPlantsGene:GLYMA_09G019200	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:K7LBC4
EnsemblPlants:KRH36708	ProteinID:KRH36708	ProteinID:KRH36708.1	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913
PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI000233D4CA	:	:

Description

hypothetical protein

Coordinates

chr9:+:1511217..1511755

Molecular Weight (calculated)

16009.0 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.502

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKTKRTHRFI VFKIEEQQKQ VIVEKLGEPA QGYEDFTASL PADECRYAVY DFEYLTEGNV PKSRIFFIAW SPDTSRVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMG LDVFKSRAN

Best Arabidopsis Sequence Match ( AT5G59880.1 )
(BLAST)

001: MANAASGMAV HDDCKLKFME LKTKRTHRFI IYKIEELQKQ VIVEKIGEPG QTHEDLAASL PADECRYAIF DFDFVSSEGV PRSRIFFVAW SPDTARVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN

Arabidopsis Description

ADF3Actin-depolymerizing factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.