CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93168
KRG95386
KRH01660
KRH10268
KRH23061
KRH24799
KRH29804
KRH38098
KRH56507
KRH67068
KRH70465
KRH71847

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31200.1	KRG93168	AT3G12110.1	21798944
AT2G31200.1	KRG95386	AT3G12110.1	21798944
AT2G31200.1	KRH01660	AT3G12110.1	21798944
AT2G31200.1	KRH10268	AT3G12110.1	21798944
AT2G31200.1	KRH23061	AT3G12110.1	21798944
AT2G31200.1	KRH24799	AT3G12110.1	21798944
AT2G31200.1	KRH29804	AT3G12110.1	21798944
AT2G31200.1	KRH38098	AT3G12110.1	21798944
AT2G31200.1	KRH56507	AT3G12110.1	21798944
AT2G31200.1	KRH67068	AT3G12110.1	21798944
AT2G31200.1	KRH70465	AT3G12110.1	21798944
AT2G31200.1	KRH71847	AT3G12110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67374	Soybean	cytosol	97.26	97.26
VIT_07s0005g03310.t01	Wine grape	cytosol	86.3	88.11
KRH51874	Soybean	cytosol	68.49	85.47
Solyc09g072590.2.1	Tomato	cytosol	80.82	81.38
KRG92420	Soybean	cytosol	82.19	81.08
KRH34385	Soybean	cytosol	81.51	80.41
AT2G31200.1	Thale cress	cytosol	78.08	78.08
Bra018268.1-P	Field mustard	mitochondrion	77.4	77.4
CDY10786	Canola	cytosol	77.4	77.4
CDY24750	Canola	cytosol	76.03	76.03
Os12t0628100-01	Rice	extracellular	72.6	73.1
Os03t0780400-01	Rice	plastid	72.6	73.1
Zm00001d013141_P001	Maize	cytosol	71.92	72.41
EER90794	Sorghum	cytosol	71.92	72.41
Zm00001d034326_P001	Maize	cytosol	63.7	70.45
TraesCS5D01G423800.1	Wheat	golgi	69.86	70.34
KRH29274	Soybean	cytosol	63.01	69.7
TraesCS5A01G416100.1	Wheat	cytosol	69.18	69.66
KRH24296	Soybean	cytosol, plastid	63.7	65.03
PGSC0003DMT400026656	Potato	mitochondrion	79.45	64.09
KRH19714	Soybean	nucleus	59.59	62.59
KRH41156	Soybean	cytosol	55.48	62.31
KRH51402	Soybean	cytosol	60.27	61.54
KRH32309	Soybean	cytosol, nucleus	60.27	61.11
TraesCS1B01G197600.1	Wheat	cytosol	62.33	60.67
TraesCS1D01G186600.1	Wheat	cytosol	62.33	60.26
KRH35309	Soybean	cytosol	56.16	59.85
KRG91521	Soybean	cytosol	56.16	59.85
GSMUA_Achr1P09160_001	Banana	cytosol	79.45	59.49
KRH27939	Soybean	cytosol	55.48	59.12
Os10t0521100-01	Rice	cytosol	60.96	58.94
KRH77527	Soybean	cytosol	54.79	58.39
KRH11708	Soybean	mitochondrion	55.48	58.27
KRH36708	Soybean	mitochondrion	55.48	58.27
TraesCS1A01G183100.2	Wheat	cytosol	61.64	58.06
HORVU1Hr1G048450.4	Barley	cytosol	62.33	57.59
HORVU5Hr1G100770.1	Barley	cytosol, plastid	69.86	51.0
KRH59855	Soybean	endoplasmic reticulum, extracellular	57.53	49.7
KXG39048	Sorghum	plastid	61.64	47.62
Zm00001d029656_P003	Maize	cytosol	59.59	41.43
Zm00001d034024_P001	Maize	cytosol, plastid	41.78	39.61
Os07t0297500-00	Rice	cytosol	42.47	26.72

Protein Annotations

EntrezGene:100527688	MapMan:20.2.2.8	Gene3D:3.40.20.10	EMBL:ACUP02012127	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	EMBL:BT092552	UniProt:C6T540	EnsemblPlantsGene:GLYMA_19G164400	GO:GO:0003674	GO:GO:0003779
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108
InterPro:IPR029006	EnsemblPlants:KRG95660	ProteinID:KRG95660	ProteinID:KRG95660.1	PFAM:PF00241	PFscan:PS51263
PANTHER:PTHR11913	PANTHER:PTHR11913:SF21	SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI0001B14FC6	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:42526999..42529373

Molecular Weight (calculated)

16972.0 Da

IEP (calculated)

7.570

GRAVY (calculated)

-0.696

Length

146 amino acids

Sequence
(BLAST)

001: MSFRGLSRPN ASSGMGVADH SKNTFMELKQ KKVHRYLIFK VDEKKREVVV EKTGDPAESY EDFAASLPEN DCRYAVFDYD FVTSENCQKS KIFFIAWSPS
101: TSRIRAKMLY ATTKDRFRRE LDGVHYEIQA TDPTEMDLEV LRDRAH

Best Arabidopsis Sequence Match ( AT2G31200.1 )
(BLAST)

001: MSFRGLSRPN AISGMGVADE SKTTFLELQR KKTHRYVVFK IDESKKEVVV EKTGNPTESY DDFLASLPDN DCRYAVYDFD FVTSENCQKS KIFFFAWSPS
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN

Arabidopsis Description

ADF6Actin-depolymerizing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.