Factsheet for VIT_07s0005g03310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g04570.t01
VIT_08s0007g06520.t01
VIT_13s0019g01240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31200.1	VIT_06s0004g04570.t01	AT3G12110.1	21798944
AT2G31200.1	VIT_08s0007g06520.t01	AT3G12110.1	21798944
AT2G31200.1	VIT_13s0019g01240.t01	AT3G12110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0049g00980.t01	Wine grape	cytosol	88.11	88.11
KRH67374	Soybean	cytosol	89.51	87.67
KRG95660	Soybean	cytosol	88.11	86.3
Solyc09g072590.2.1	Tomato	cytosol	85.31	84.14
Bra018268.1-P	Field mustard	mitochondrion	81.82	80.14
CDY10786	Canola	cytosol	81.82	80.14
CDY24750	Canola	cytosol	81.12	79.45
AT2G31200.1	Thale cress	cytosol	80.42	78.77
Os12t0628100-01	Rice	extracellular	79.02	77.93
Os03t0780400-01	Rice	plastid	75.52	74.48
EER90794	Sorghum	cytosol	74.13	73.1
TraesCS5D01G423800.1	Wheat	golgi	74.13	73.1
Zm00001d013141_P001	Maize	cytosol	73.43	72.41
TraesCS5A01G416100.1	Wheat	cytosol	73.43	72.41
Zm00001d034326_P001	Maize	cytosol	66.43	71.97
VIT_03s0038g02220.t01	Wine grape	cytosol	62.94	68.18
PGSC0003DMT400026656	Potato	mitochondrion	83.92	66.3
VIT_16s0050g00220.t01	Wine grape	cytosol	58.74	63.64
VIT_13s0019g00550.t01	Wine grape	cytosol	61.54	63.31
TraesCS1B01G197600.1	Wheat	cytosol	65.73	62.67
TraesCS1D01G186600.1	Wheat	cytosol	65.73	62.25
GSMUA_Achr1P09160_001	Banana	cytosol	84.62	62.05
Os10t0521100-01	Rice	cytosol	63.64	60.26
TraesCS1A01G183100.2	Wheat	cytosol	65.03	60.0
HORVU1Hr1G048450.4	Barley	cytosol	65.73	59.49
VIT_06s0004g04280.t01	Wine grape	cytosol	62.94	53.57
HORVU5Hr1G100770.1	Barley	cytosol, plastid	74.13	53.0
VIT_10s0092g00330.t01	Wine grape	cytosol	32.17	50.55
VIT_11s0103g00260.t01	Wine grape	cytosol	41.26	50.0
VIT_08s0040g03360.t01	Wine grape	plastid	63.64	48.15
KXG39048	Sorghum	plastid	63.64	48.15
Zm00001d029656_P003	Maize	cytosol	61.54	41.9
Zm00001d034024_P001	Maize	cytosol, plastid	44.76	41.56
VIT_15s0046g03040.t01	Wine grape	cytosol	58.04	32.42
Os07t0297500-00	Rice	cytosol	44.06	27.16

Protein Annotations

EntrezGene:100232871	wikigene:100232871	MapMan:20.2.2.8	Gene3D:3.40.20.10	ProteinID:AAL79826	ProteinID:AAL79826.1
EntrezGene:ADF	wikigene:ADF	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	EMBL:AF440310
ProteinID:CCB60113	ProteinID:CCB60113.1	UniProt:F6HZJ8	EMBL:FN596502	GO:GO:0003674	GO:GO:0003779
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108
InterPro:IPR029006	RefSeq:NP_001268119.1	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF21
UniProt:Q8SAG3	SMART:SM00102	SUPFAM:SSF55753	TIGR:TC54519	TIGR:TC54647	TIGR:TC56016
UniParc:UPI00000A57D6	ArrayExpress:VIT_07s0005g03310	EnsemblPlantsGene:VIT_07s0005g03310	EnsemblPlants:VIT_07s0005g03310.t01	SEG:seg	:

Description

Actin-depolymerizing factor [Source:UniProtKB/Swiss-Prot;Acc:Q8SAG3]

Coordinates

chr7:-:6157797..6160867

Molecular Weight (calculated)

16551.6 Da

IEP (calculated)

7.572

GRAVY (calculated)

-0.599

Length

143 amino acids

Sequence
(BLAST)

001: MSFRGLNASS GMGVADHSKN TFLELKRKKV HRYVIFKIDE KKKEVVVEKT GGPAESFDEF AAALPENDCR YAVYDFDFVT SENCQKSKIF FIAWSPDSSR
101: IRAKMLYATS KERFRRELDG VHYEIQATDP TEMDLEVLRE RAH

Best Arabidopsis Sequence Match ( AT2G31200.1 )
(BLAST)

001: MSFRGLSRPN AISGMGVADE SKTTFLELQR KKTHRYVVFK IDESKKEVVV EKTGNPTESY DDFLASLPDN DCRYAVYDFD FVTSENCQKS KIFFFAWSPS
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN

Arabidopsis Description

ADF6Actin-depolymerizing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.