Factsheet for VIT_08s0007g06520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g04570.t01
VIT_07s0031g00460.t01
VIT_08s0007g06520.t01
VIT_13s0019g01240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	VIT_07s0031g00460.t01	AT2G23420.1	21798944
AT2G37620.1	VIT_06s0004g04570.t01	AT2G37620.1	21798944
AT2G37620.1	VIT_08s0007g06520.t01	AT2G37620.1	21798944
AT2G37620.1	VIT_13s0019g01240.t01	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04570.t01	Wine grape	cytosol	98.41	98.67
VIT_12s0178g00200.t01	Wine grape	cytosol	97.88	97.88
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	97.88	97.88
PGSC0003DMT400060953	Potato	cytosol	97.88	97.88
GSMUA_AchrUn_...	Banana	plasma membrane	97.61	97.61
KRG95386	Soybean	cytosol	97.61	97.61
KRH38098	Soybean	cytosol	97.61	97.61
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	97.61	97.61
KRH71847	Soybean	endoplasmic reticulum, nucleus	97.35	97.35
GSMUA_Achr10P...	Banana	cytosol	67.9	97.34
VIT_13s0019g01240.t01	Wine grape	cytosol	97.08	97.08
AT3G12110.1	Thale cress	cytosol	96.55	96.55
AT3G53750.2	Thale cress	cytosol	96.29	96.29
AT3G46520.2	Thale cress	cytosol	96.29	96.29
Bra034778.1-P	Field mustard	cytosol	96.29	96.29
CDY01102	Canola	cytosol	96.29	96.29
AT2G37620.1	Thale cress	cytosol	96.29	96.29
Bra006719.1-P	Field mustard	cytosol	84.62	96.08
CDX99111	Canola	cytosol	96.02	96.02
CDY38066	Canola	cytosol	96.02	96.02
CDY30846	Canola	cytosol	96.02	96.02
CDY21777	Canola	cytosol	96.02	96.02
CDY08455	Canola	cytosol	96.02	96.02
CDX88698	Canola	cytosol	96.02	96.02
CDX86081	Canola	cytosol	96.02	96.02
AT5G59370.2	Thale cress	cytosol	96.02	96.02
Bra014865.1-P	Field mustard	cytosol	96.02	96.02
CDX76191	Canola	cytosol	96.02	96.02
Bra018210.1-P	Field mustard	cytosol	96.02	96.02
Bra019486.1-P	Field mustard	cytosol	96.02	96.02
CDX71119	Canola	cytosol	96.02	96.02
CDX82985	Canola	cytosol	95.76	95.76
CDX78202	Canola	cytosol	95.76	95.76
Bra007025.1-P	Field mustard	cytosol	95.76	95.76
Bra033819.1-P	Field mustard	cytosol	95.76	95.76
Bra000010.1-P	Field mustard	cytosol	95.49	95.49
CDY53444	Canola	cytosol	95.49	95.49
CDX73527	Canola	cytosol	89.39	95.47
Bra020319.1-P	Field mustard	cytosol	85.94	95.29
CDY48688	Canola	cytosol	85.94	95.29
CDX91373	Canola	cytosol	95.23	95.23
CDX74944	Canola	cytosol	95.23	95.23
Bra017166.1-P	Field mustard	cytosol	95.23	95.23
CDY07779	Canola	cytosol	88.59	94.89
CDY65255	Canola	cytosol	83.29	94.86
CDX93360	Canola	cytosol	83.29	94.86
Bra005178.1-P	Field mustard	cytosol	88.59	94.35
GSMUA_Achr7P18630_001	Banana	cytosol	79.05	93.12
CDX94448	Canola	cytosol	92.57	90.18
CDX79746	Canola	cytosol	88.59	89.78
Bra003156.1-P	Field mustard	cytosol	48.81	89.32
VIT_04s0044g00580.t01	Wine grape	extracellular	98.14	80.43
CDY71336	Canola	cytosol	55.7	76.36
CDX67573	Canola	cytosol	55.7	69.08
VIT_11s0016g00770.t01	Wine grape	cytosol	67.37	67.55
Bra002571.1-P	Field mustard	nucleus	95.76	59.67
CDY33033	Canola	nucleus	78.25	54.53
CDX80274	Canola	nucleus	77.19	53.01
VIT_14s0068g01630.t01	Wine grape	cytosol	44.83	43.44
VIT_13s0064g00730.t01	Wine grape	cytosol	37.67	39.34
VIT_01s0137g00280.t01	Wine grape	cytosol	38.99	34.35
VIT_00s0214g00170.t01	Wine grape	cytosol	14.85	32.0
VIT_17s0000g04010.t01	Wine grape	mitochondrion	33.95	28.96
VIT_11s0016g05490.t01	Wine grape	cytosol	32.63	28.41

Protein Annotations

EntrezGene:100253833	wikigene:100253833	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	UniProt:A5B0L2
ProteinID:ADP07946	ProteinID:ADP07946.1	ProteinID:AFO85874	ProteinID:AFO85874.1	EMBL:AM442507	InterPro:Actin
InterPro:Actin/actin-like_CS	InterPro:Actin_CS	ProteinID:CAN71887	ProteinID:CAN71887.1	ProteinID:CCB55246	ProteinID:CCB55246.1
EMBL:FN595991	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EMBL:GU585869
EMBL:JQ989220	EntrezGene:LOC100253833	wikigene:LOC100253833	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF355	SMART:SM00268	SUPFAM:SSF53067
UniParc:UPI000151FC62	ArrayExpress:VIT_08s0007g06520	EnsemblPlantsGene:VIT_08s0007g06520	EnsemblPlants:VIT_08s0007g06520.t01	unigene:Vvi.23975	RefSeq:XP_002279672
RefSeq:XP_002279672.1	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:20250188..20251901

Molecular Weight (calculated)

41719.1 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.187

Length

377 amino acids

Sequence
(BLAST)

001: MAETEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDMKEKLAY IALDYEQELE TAKTSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KGEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT3G12110.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.