Factsheet for Bra003156.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67573	Canola	cytosol	98.06	66.45
Bra020319.1-P	Field mustard	cytosol	86.89	52.65
Bra005178.1-P	Field mustard	cytosol	90.29	52.54
AT3G53750.2	Thale cress	cytosol	93.2	50.93
Bra007025.1-P	Field mustard	cytosol	92.72	50.66
Bra014865.1-P	Field mustard	cytosol	92.72	50.66
Bra000010.1-P	Field mustard	cytosol	92.23	50.4
GSMUA_AchrUn_...	Banana	plasma membrane	91.75	50.13
Bra017166.1-P	Field mustard	cytosol	91.26	49.87
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	90.29	49.34
KRH10268	Soybean	mitochondrion, nucleus	90.29	49.34
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	89.81	49.07
KRH38098	Soybean	cytosol	89.81	49.07
KRG93168	Soybean	mitochondrion, nucleus	89.81	49.07
Bra033819.1-P	Field mustard	cytosol	89.81	49.07
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	83.98	49.01
VIT_06s0004g04570.t01	Wine grape	cytosol	89.32	48.94
Bra019486.1-P	Field mustard	cytosol	89.32	48.81
VIT_08s0007g06520.t01	Wine grape	cytosol	89.32	48.81
Bra028615.1-P	Field mustard	cytosol	89.32	48.81
KRH71847	Soybean	endoplasmic reticulum, nucleus	89.32	48.81
Bra018210.1-P	Field mustard	cytosol	89.32	48.81
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	89.32	48.81
VIT_13s0019g01240.t01	Wine grape	cytosol	88.83	48.54
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	88.83	48.54
KRH01660	Soybean	mitochondrion, nucleus	88.35	48.28
KRH70465	Soybean	mitochondrion, nucleus	88.35	48.28
KRG95386	Soybean	cytosol	88.35	48.28
Bra034778.1-P	Field mustard	cytosol	88.35	48.28
Bra006033.1-P	Field mustard	cytosol	87.38	47.75
Bra009081.1-P	Field mustard	cytosol	81.07	47.31
PGSC0003DMT400023026	Potato	cytosol	85.92	46.95
Solyc10g086460.1.1	Tomato	unclear	84.95	46.42
PGSC0003DMT400049429	Potato	cytosol	84.95	46.42
GSMUA_Achr7P18630_001	Banana	cytosol	70.87	45.62
KRH24799	Soybean	cytosol	90.29	45.37
Solyc09g010750.1.1	Tomato	cytosol	37.86	43.58
GSMUA_Achr10P...	Banana	cytosol	54.37	42.59
Bra022356.1-P	Field mustard	cytosol	66.5	42.41
Bra006719.1-P	Field mustard	cytosol	67.96	42.17
Bra016895.1-P	Field mustard	cytosol	57.77	39.27
Bra002571.1-P	Field mustard	nucleus	90.29	30.74
Bra039097.1-P	Field mustard	cytosol	46.12	24.42
Bra025243.1-P	Field mustard	cytosol	40.78	22.95
Bra003429.1-P	Field mustard	cytosol	33.5	19.17
Bra016738.1-P	Field mustard	cytosol	35.44	17.1
Bra019815.1-P	Field mustard	cytosol	34.47	16.63
Bra007566.1-P	Field mustard	cytosol	17.96	11.28
Bra030818.1-P	Field mustard	cytosol	8.25	7.66
Bra019816.1-P	Field mustard	nucleus	8.74	4.77

Protein Annotations

EnsemblPlants:Bra003156.1	EnsemblPlants:Bra003156.1-P	EnsemblPlantsGene:Bra003156	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin
PANTHER:PTHR11937	PANTHER:PTHR11937:SF355	PFAM:PF00022	PRINTS:PR00190	SMART:SM00268	SUPFAM:SSF53067
UniParc:UPI00025413C2	UniProt:M4CG23	MapMan:35.1	:	:	:

Description

AT2G37620 (E=2e-034) ACT1, AAc1 | ACT1 (ACTIN 1); structural constituent of cytoskeleton

Coordinates

chrA07:+:11613848..11614797

Molecular Weight (calculated)

22384.7 Da

IEP (calculated)

4.410

GRAVY (calculated)

-0.155

Length

206 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMIK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA HSPSVLSVAP EEHPIRLTEA PLNPKANREK MTQIMFETFN
101: ALAMYVAIQA VLSLYASGRT TGIVLDSGDG RDLTDALMKI LTERGFSFTT TAEREIVRDI KEKLCYIALD YEQELETSKT SSSVEKNYEL PDGQVITIGS
201: ELVFCS

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.