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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g093290.2.1
Solyc03g044430.2.1
Solyc09g010750.1.1
Solyc10g086460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37620.1 Solyc02g093290.2.1 AT2G23420.1 21798944
AT2G37620.1 Solyc03g044430.2.1 AT2G23420.1 21798944
AT2G37620.1 Solyc09g010750.1.1 AT2G37620.1 21798944
AT2G37620.1 Solyc10g086460.1.1 AT2G37620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400049429 Potato cytosol 99.73 99.73
GSMUA_AchrUn_... Banana plasma membrane 94.96 94.96
AT5G59370.2 Thale cress cytosol 94.96 94.96
Solyc05g054480.2.1 Tomato extracellular, nucleus, plastid, unclear 94.96 94.96
AT3G46520.2 Thale cress cytosol 94.69 94.69
Solyc04g011500.2.1 Tomato extracellular, nucleus, plastid, unclear 94.69 94.69
GSMUA_Achr10P... Banana cytosol 66.05 94.68
CDY21777 Canola cytosol 94.43 94.43
Bra019486.1-P Field mustard cytosol 94.43 94.43
CDY38066 Canola cytosol 94.43 94.43
Solyc10g080500.1.1 Tomato extracellular, nucleus, plastid, unclear 94.43 94.43
Bra018210.1-P Field mustard cytosol 94.16 94.16
CDX71119 Canola cytosol 94.16 94.16
CDX99111 Canola cytosol 94.16 94.16
CDX88698 Canola cytosol 94.16 94.16
CDX86081 Canola cytosol 94.16 94.16
CDX82985 Canola cytosol 94.16 94.16
Bra033819.1-P Field mustard cytosol 94.16 94.16
Solyc06g076090.2.1 Tomato unclear 94.16 94.16
Solyc11g065990.1.1 Tomato nucleus, plastid, unclear 94.16 94.16
Bra006719.1-P Field mustard cytosol 82.76 93.98
Solyc03g078400.2.1 Tomato nucleus, plastid 93.9 93.9
CDY53444 Canola cytosol 93.9 93.9
AT3G53750.2 Thale cress cytosol 93.9 93.9
AT2G37620.1 Thale cress cytosol 93.9 93.9
AT3G12110.1 Thale cress cytosol 93.63 93.63
Solyc11g005330.1.1 Tomato nucleus 93.63 93.63
Bra014865.1-P Field mustard cytosol 93.63 93.63
CDX76191 Canola cytosol 93.63 93.63
Bra000010.1-P Field mustard cytosol 93.37 93.37
CDX78202 Canola cytosol 93.37 93.37
Bra007025.1-P Field mustard cytosol 93.37 93.37
Bra020319.1-P Field mustard cytosol 84.08 93.24
CDY48688 Canola cytosol 84.08 93.24
CDX74944 Canola cytosol 93.1 93.1
Solyc01g104770.2.1 Tomato nucleus 93.1 93.1
CDY30846 Canola cytosol 93.1 93.1
CDX91373 Canola cytosol 93.1 93.1
CDX73527 Canola cytosol 87.0 92.92
CDY01102 Canola cytosol 92.84 92.84
Bra034778.1-P Field mustard cytosol 92.84 92.84
Bra017166.1-P Field mustard cytosol 92.84 92.84
CDY07779 Canola cytosol 86.47 92.61
CDY08455 Canola cytosol 92.57 92.57
CDY65255 Canola cytosol 80.9 92.14
CDX93360 Canola cytosol 80.9 92.14
Bra005178.1-P Field mustard cytosol 86.47 92.09
GSMUA_Achr7P18630_001 Banana cytosol 76.92 90.62
Solyc04g071260.2.1 Tomato plastid 88.86 88.86
CDX94448 Canola cytosol 90.45 88.11
CDX79746 Canola cytosol 86.47 87.63
Solyc09g010750.1.1 Tomato cytosol 41.38 87.15
Bra003156.1-P Field mustard cytosol 46.42 84.95
CDY71336 Canola cytosol 53.58 73.45
CDX67573 Canola cytosol 53.32 66.12
Bra002571.1-P Field mustard nucleus 93.9 58.51
CDY33033 Canola nucleus 76.66 53.42
CDX80274 Canola nucleus 75.33 51.73
Solyc02g094320.2.1 Tomato cytosol 44.56 43.19
Solyc11g008500.1.1 Tomato cytosol, nucleus 38.2 40.0
Solyc12g037980.1.1 Tomato nucleus 42.18 36.55
Solyc05g013940.2.1 Tomato cytosol 39.79 34.97
Solyc04g024530.2.1 Tomato cytosol 39.26 34.5
Solyc05g018600.2.1 Tomato cytosol 31.57 27.17
Protein Annotations
EnsemblPlants:Solyc10g086460.1.1EnsemblPlantsGene:Solyc10g086460.1Gene3D:3.30.420.40Gene3D:3.90.640.10GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005524InterPro:ActinInterPro:Actin/actin-like_CSInterPro:Actin_CSPANTHER:PTHR11937
PANTHER:PTHR11937:SF366PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406ScanProsite:PS01132SMART:SM00268
SUPFAM:SSF53067UniParc:UPI00027694D0UniProt:K4D478MapMan:20.2.1::
Description
No Description!
Coordinates
chr10:+:65273220..65275016
Molecular Weight (calculated)
41689.1 Da
IEP (calculated)
5.286
GRAVY (calculated)
-0.147
Length
377 amino acids
Sequence
(BLAST)
001: MADVDDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN CPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTEH LAKILTERGY
201: SFTTSAEKEI VRDMKEKLSY IALDFEQELD MVKSSSSVEK NFELPDGQVI TIGAERFRCP EVLFQPSTIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEFDESGPS IVHRKCF
Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.