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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid, unclear
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 plastid: 22908117
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g080500.1.1 Tomato extracellular, nucleus, plastid, unclear 98.14 98.14
Solyc04g011500.2.1 Tomato extracellular, nucleus, plastid, unclear 98.14 98.14
Solyc05g054480.2.1 Tomato extracellular, nucleus, plastid, unclear 97.88 97.88
Solyc06g076090.2.1 Tomato unclear 97.61 97.61
PGSC0003DMT400001169 Potato cytosol 97.35 97.09
KRH01660 Soybean mitochondrion, nucleus 96.82 96.82
KRH56507 Soybean endoplasmic reticulum, mitochondrion 96.82 96.82
KRH70465 Soybean mitochondrion, nucleus 96.82 96.82
VIT_13s0019g01240.t01 Wine grape cytosol 96.55 96.55
KRG93168 Soybean mitochondrion, nucleus 96.55 96.55
Solyc11g005330.1.1 Tomato nucleus 95.23 95.23
Solyc03g078400.2.1 Tomato nucleus, plastid 94.96 94.96
Solyc01g104770.2.1 Tomato nucleus 94.96 94.96
Solyc10g086460.1.1 Tomato unclear 94.16 94.16
Solyc04g071260.2.1 Tomato plastid 90.98 90.98
Solyc09g010750.1.1 Tomato cytosol 41.11 86.59
Solyc02g094320.2.1 Tomato cytosol 44.83 43.44
Solyc11g008500.1.1 Tomato cytosol, nucleus 38.2 40.0
Solyc12g037980.1.1 Tomato nucleus 43.77 37.93
Solyc05g013940.2.1 Tomato cytosol 40.05 35.2
Solyc04g024530.2.1 Tomato cytosol 39.52 34.73
Solyc05g018600.2.1 Tomato cytosol 31.57 27.17
Protein Annotations
EnsemblPlants:Solyc11g065990.1.1EnsemblPlantsGene:Solyc11g065990.1Gene3D:3.30.420.40Gene3D:3.90.640.10GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005524InterPro:ActinInterPro:Actin/actin-like_CSInterPro:Actin_CSPANTHER:PTHR11937
PANTHER:PTHR11937:SF276PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406ScanProsite:PS00432ScanProsite:PS01132
SMART:SM00268SUPFAM:SSF53067UniParc:UPI0002769C9CUniProt:K4D9K8MapMan:20.2.1:
Description
No Description!
Coordinates
chr11:-:51602949..51604229
Molecular Weight (calculated)
41726.1 Da
IEP (calculated)
5.289
GRAVY (calculated)
-0.198
Length
377 amino acids
Sequence
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILSLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVMDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTSAEREI VRDVKEKLSY IALDYEQEIE TSKTSSNVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Best Arabidopsis Sequence Match ( AT3G12110.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.