Factsheet for Solyc05g018600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g033480.2.1
Solyc03g063220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	Solyc03g063220.1.1	AT3G12810.1	17142478
AT3G33520.1	Solyc03g063220.1.1	AT3G12810.1	17470967
AT3G33520.1	Solyc03g033480.2.1	AT5G37055.1	17142478
AT3G33520.1	Solyc03g033480.2.1	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038724	Potato	cytosol	97.95	97.95
VIT_11s0016g05490.t01	Wine grape	cytosol	77.17	78.06
KRH61849	Soybean	cytosol, nucleus	73.52	73.85
AT3G33520.1	Thale cress	cytosol	65.75	68.41
CDY42404	Canola	cytosol	65.98	67.68
GSMUA_AchrUn_...	Banana	cytosol	66.89	67.36
Bra030818.1-P	Field mustard	cytosol	34.02	67.12
OQU79631	Sorghum	cytosol	64.61	65.51
Zm00001d024059_P002	Maize	cytosol	63.93	65.12
Os01t0269900-01	Rice	cytosol	63.24	64.57
HORVU0Hr1G005770.1	Barley	cytosol	62.33	63.49
TraesCS2D01G600800.1	Wheat	cytosol	62.33	63.49
TraesCS2B01G597500.1	Wheat	cytosol	62.33	63.49
TraesCS2A01G585700.1	Wheat	cytosol	62.33	63.49
TraesCS1B01G333100.1	Wheat	cytosol	62.1	63.26
Solyc04g071260.2.1	Tomato	plastid	28.54	33.16
Solyc03g078400.2.1	Tomato	nucleus, plastid	28.08	32.63
Solyc01g104770.2.1	Tomato	nucleus	28.08	32.63
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	27.85	32.36
Solyc11g005330.1.1	Tomato	nucleus	27.85	32.36
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	27.63	32.1
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	27.63	32.1
Solyc06g076090.2.1	Tomato	unclear	27.4	31.83
Solyc10g086460.1.1	Tomato	unclear	27.17	31.57
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	27.17	31.57
Solyc02g094320.2.1	Tomato	cytosol	25.11	28.28
Solyc09g010750.1.1	Tomato	cytosol	10.96	26.82
Solyc11g008500.1.1	Tomato	cytosol, nucleus	21.92	26.67
Solyc04g024530.2.1	Tomato	cytosol	24.43	24.94
Solyc12g037980.1.1	Tomato	nucleus	23.52	23.68
Solyc05g013940.2.1	Tomato	cytosol	22.83	23.31

Protein Annotations

MapMan:35.1	InterPro:Actin	InterPro:Arp6	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0006950
GO:GO:0006970	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058
GO:GO:0009266	GO:GO:0009628	GO:GO:0009791	GO:GO:0009845	GO:GO:0009908	GO:GO:0009910
GO:GO:0009987	GO:GO:0016043	UniProt:K4BZB4	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF47
SMART:SM00268	SUPFAM:SSF53067	EnsemblPlantsGene:Solyc05g018600.2	EnsemblPlants:Solyc05g018600.2.1	UniParc:UPI00027673FA	:

Description

Actin-related protein 6 [Source:Projected from Arabidopsis thaliana (AT3G33520) UniProtKB/Swiss-Prot;Acc:Q8LGE3]

Coordinates

chr5:-:22403561..22406376

Molecular Weight (calculated)

49207.0 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.242

Length

438 amino acids

Sequence
(BLAST)

001: MSNVVVLDNG AGVIKAGIGG ERDPTAIVPN SMGRPLSSKK WLMADQLLSP DVDLTSATAR RPFDRGYLIN PDLQSSIWSH IFSNLLKITP SHSSLLLTEP
101: LFNIPSIQRS IDEIVFEDFN FKALYVSDSP SLVHLYEASR RPYGLVSKAQ CSLVVDCGFS FTHASPVVQN FTLNYAVKRL DLGGKALSNY LKELVSYRSV
201: NLMDESFLMD HVKEELCFVS LDLPRDLRIA RKPGKDNLFR CTYVLPDGIT HTKGFLKDPE EPKRYLPLYD EAPQQVAGEQ IDMDQLENTD NSEDRNRNNG
301: SKIDLTKNEF GLTNERFLVP EMMFRPADLG LNQAGLAECI HRAISSCHSH LHPVLYESII LTGGSTLFPH FAKRLEMDLR PLVPDKYCLK ITTQEDPILG
401: VWRGGSLLAS SPDFDAMCIT KAEYEELGSA RCRKRFFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.