Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030818.1-P | Field mustard | cytosol | 51.99 | 100.0 |
| AT3G33520.1 | Thale cress | cytosol | 87.82 | 89.07 |
| VIT_11s0016g05490.t01 | Wine grape | cytosol | 69.32 | 68.36 |
| KRH61849 | Soybean | cytosol, nucleus | 69.56 | 68.12 |
| Solyc05g018600.2.1 | Tomato | cytosol | 67.68 | 65.98 |
| PGSC0003DMT400038724 | Potato | cytosol | 67.68 | 65.98 |
| Zm00001d024059_P002 | Maize | cytosol | 64.64 | 64.19 |
| TraesCS2B01G597500.1 | Wheat | cytosol | 64.4 | 63.95 |
| TraesCS2A01G585700.1 | Wheat | cytosol | 64.17 | 63.72 |
| TraesCS1B01G333100.1 | Wheat | cytosol | 64.17 | 63.72 |
| TraesCS2D01G600800.1 | Wheat | cytosol | 63.93 | 63.49 |
| HORVU0Hr1G005770.1 | Barley | cytosol | 63.47 | 63.02 |
| OQU79631 | Sorghum | cytosol | 63.47 | 62.73 |
| Os01t0269900-01 | Rice | cytosol | 62.53 | 62.24 |
| GSMUA_AchrUn_... | Banana | cytosol | 62.53 | 61.38 |
| CDY40061 | Canola | cytosol | 27.87 | 33.71 |
| CDX85794 | Canola | cytosol | 27.87 | 33.71 |
| CDY31972 | Canola | cytosol | 27.87 | 33.71 |
| CDY30296 | Canola | cytosol | 27.87 | 33.71 |
| CDY65255 | Canola | cytosol | 26.0 | 33.53 |
| CDX93360 | Canola | cytosol | 26.0 | 33.53 |
| CDX73527 | Canola | cytosol | 27.63 | 33.43 |
| CDX87810 | Canola | cytosol | 28.81 | 32.63 |
| CDY21607 | Canola | cytosol | 28.1 | 31.83 |
| CDX69885 | Canola | cytosol | 28.1 | 31.83 |
| CDY56544 | Canola | cytosol | 28.1 | 31.83 |
| CDX81140 | Canola | cytosol | 28.1 | 31.83 |
| CDY30846 | Canola | cytosol | 27.87 | 31.57 |
| CDY08455 | Canola | cytosol | 27.87 | 31.57 |
| CDX78202 | Canola | cytosol | 27.87 | 31.57 |
| CDX76191 | Canola | cytosol | 27.87 | 31.57 |
| CDY01102 | Canola | cytosol | 27.87 | 31.57 |
| CDY18545 | Canola | cytosol | 27.63 | 31.3 |
| CDX95498 | Canola | cytosol | 27.63 | 31.3 |
| CDX92272 | Canola | cytosol | 27.63 | 31.3 |
| CDY61982 | Canola | cytosol | 27.63 | 31.3 |
| CDX82326 | Canola | cytosol | 27.63 | 31.3 |
| CDY14813 | Canola | cytosol | 25.53 | 31.05 |
| CDY53444 | Canola | cytosol | 27.4 | 31.03 |
| CDX71119 | Canola | cytosol | 27.4 | 31.03 |
| CDX99111 | Canola | cytosol | 27.4 | 31.03 |
| CDX88698 | Canola | cytosol | 27.4 | 31.03 |
| CDX86081 | Canola | cytosol | 27.4 | 31.03 |
| CDX82985 | Canola | cytosol | 27.4 | 31.03 |
| CDX99315 | Canola | cytosol | 23.42 | 30.96 |
| CDY48688 | Canola | cytosol | 24.59 | 30.88 |
| CDX74944 | Canola | cytosol | 27.17 | 30.77 |
| CDY21777 | Canola | cytosol | 27.17 | 30.77 |
| CDY38066 | Canola | cytosol | 27.17 | 30.77 |
| CDX91373 | Canola | cytosol | 27.17 | 30.77 |
| CDY07779 | Canola | cytosol | 25.29 | 30.68 |
| CDX92271 | Canola | cytosol | 22.72 | 30.6 |
| CDY06885 | Canola | cytosol | 23.42 | 30.21 |
| CDX79746 | Canola | cytosol | 25.29 | 29.03 |
| CDX94448 | Canola | cytosol | 26.23 | 28.94 |
| CDY20066 | Canola | cytosol | 25.29 | 27.76 |
| CDY00172 | Canola | cytosol | 25.29 | 27.76 |
| CDY52404 | Canola | cytosol | 25.06 | 27.09 |
| CDY13674 | Canola | cytosol | 25.06 | 27.09 |
| CDY62715 | Canola | cytosol | 22.01 | 25.9 |
| CDY71336 | Canola | cytosol | 16.63 | 25.82 |
| CDY56730 | Canola | cytosol | 21.31 | 25.28 |
| CDY21087 | Canola | cytosol | 25.06 | 25.06 |
| CDY34585 | Canola | cytosol | 25.06 | 25.06 |
| CDX96721 | Canola | cytosol | 25.53 | 24.89 |
| CDX83847 | Canola | cytosol | 25.53 | 24.83 |
| CDX98005 | Canola | cytosol | 24.82 | 24.82 |
| CDX67843 | Canola | cytosol | 20.84 | 24.72 |
| CDY26159 | Canola | cytosol | 25.53 | 24.66 |
| CDY19213 | Canola | cytosol | 25.53 | 24.66 |
| CDY19392 | Canola | cytosol | 24.59 | 24.59 |
| CDX71774 | Canola | cytosol | 20.14 | 24.09 |
| CDX67573 | Canola | cytosol | 15.93 | 22.37 |
| CDY52344 | Canola | cytosol | 20.84 | 22.08 |
| CDY33033 | Canola | nucleus | 22.25 | 17.56 |
| CDX80274 | Canola | nucleus | 21.78 | 16.94 |
Protein Annotations
| MapMan:12.4.4.4 | GO:A0A078HYI9 | UniProt:A0A078HYI9 | InterPro:Actin | InterPro:Arp6 | EnsemblPlants:CDY42404 |
| ProteinID:CDY42404 | ProteinID:CDY42404.1 | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006338 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0006970 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008283 | GO:GO:0009058 | GO:GO:0009266 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009845 | GO:GO:0009908 | GO:GO:0009910 | GO:GO:0009987 |
| GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00074697001 | PFAM:PF00022 | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF47 | SMART:SM00268 |
| SUPFAM:SSF53067 | UniParc:UPI0004EE93F5 | SEG:seg | : | : | : |
Description
BnaA08g00100DActin-related protein 6 [Source:Projected from Arabidopsis thaliana (AT3G33520) UniProtKB/Swiss-Prot;Acc:Q8LGE3]
Coordinates
chrLK032523:+:201080..203012
Molecular Weight (calculated)
47577.2 Da
IEP (calculated)
6.425
GRAVY (calculated)
-0.141
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNNIVVLDN GGGLIKAGQG GERDPLVVIP NCLFKPLSSK KFIYPPPLSD LDVDIDLTSA AVRRPIDRGY LINPDLQRDI WSHLFSSLLR ITPTSSSLLL
101: TEPPLSIPSV QRATDELVFE DFGFSSLYLA NPQSLVHLYE ASRQPGSILS RTQCSLVVDC GFSFTHAVPV LHNFTLNYAV KRIDLGGKAF TNYLKELVSY
201: RSINVMDQTF LMDDAKEKLC FVSLDLHRDL NLARERRTGN VLKSTYVLPD GVTHTKGYVK DPQSAKSFLT LGLSDGGANT VMDKVDVEKK KADMNKNEID
301: LTNERFLVPE TLFQPADLGM NQAGIAECIV RAVSSCHSYL QPVLYQSIIL TGGSTLFPQL KERLERELRP LVPDHFDVKI TTQEDPILGV WRGGSLLASS
401: PDFESMCVTK AEYEELGSAR CRRRFFH
101: TEPPLSIPSV QRATDELVFE DFGFSSLYLA NPQSLVHLYE ASRQPGSILS RTQCSLVVDC GFSFTHAVPV LHNFTLNYAV KRIDLGGKAF TNYLKELVSY
201: RSINVMDQTF LMDDAKEKLC FVSLDLHRDL NLARERRTGN VLKSTYVLPD GVTHTKGYVK DPQSAKSFLT LGLSDGGANT VMDKVDVEKK KADMNKNEID
301: LTNERFLVPE TLFQPADLGM NQAGIAECIV RAVSSCHSYL QPVLYQSIIL TGGSTLFPQL KERLERELRP LVPDHFDVKI TTQEDPILGV WRGGSLLASS
401: PDFESMCVTK AEYEELGSAR CRRRFFH
001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H
Arabidopsis Description
ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.