Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99412 | Canola | mitochondrion | 95.38 | 95.38 |
| CDY40293 | Canola | mitochondrion | 93.85 | 93.85 |
| CDX77159 | Canola | mitochondrion | 90.77 | 90.77 |
| CDY57389 | Canola | mitochondrion | 95.38 | 36.26 |
| CDY32983 | Canola | mitochondrion | 93.85 | 35.67 |
| CDY70943 | Canola | nucleus | 93.85 | 35.67 |
| AT5G37055.1 | Thale cress | mitochondrion | 89.23 | 33.92 |
| VIT_08s0007g08060.t01 | Wine grape | mitochondrion | 66.15 | 25.0 |
| KRH30163 | Soybean | nucleus | 66.15 | 24.86 |
| KRG98203 | Soybean | nucleus | 66.15 | 24.86 |
| PGSC0003DMT400058037 | Potato | nucleus | 61.54 | 23.39 |
| Solyc03g033480.2.1 | Tomato | nucleus | 60.0 | 22.81 |
| Zm00001d052325_P001 | Maize | cytosol, nucleus, plastid | 58.46 | 21.97 |
| Os03t0367800-01 | Rice | cytosol, mitochondrion, nucleus | 56.92 | 21.14 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 64.62 | 21.0 |
| EES16499 | Sorghum | mitochondrion | 55.38 | 20.93 |
| EES16500 | Sorghum | cytosol, nucleus, plastid | 55.38 | 20.81 |
| TraesCS5A01G151300.1 | Wheat | cytosol, nucleus, plastid | 55.38 | 20.81 |
| TraesCS5B01G149800.2 | Wheat | cytosol, nucleus, plastid | 55.38 | 20.81 |
| HORVU5Hr1G047490.2 | Barley | plastid | 55.38 | 19.35 |
| TraesCS5D01G156400.2 | Wheat | cytosol, mitochondrion, nucleus | 55.38 | 19.05 |
| CDY60020 | Canola | cytosol | 6.15 | 3.05 |
| KXG22781 | Sorghum | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX99372 | EnsemblPlantsGene:GSBRNA2T00107681001 | ProteinID:CDX99372 | ProteinID:CDX99372.1 | SEG:seg | UniParc:UPI0004EE70A2 |
| MapMan:12.4.4.3 | : | : | : | : | : |
Description
BnaC01g11800D
Coordinates
chrLK031910:+:173902..174182
Molecular Weight (calculated)
7141.1 Da
IEP (calculated)
4.081
GRAVY (calculated)
-0.729
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MANRRVSSRT RKVATKMAEA LTSTDNRTQA AIARLEALEN DNGALEVVYL NDDEEASLDE DDDLG
001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
Arabidopsis Description
SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.