Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G151300.1 | Wheat | cytosol, nucleus, plastid | 99.42 | 99.42 |
| EES16500 | Sorghum | cytosol, nucleus, plastid | 93.06 | 93.06 |
| HORVU5Hr1G047490.2 | Barley | plastid | 98.27 | 91.4 |
| Zm00001d052325_P001 | Maize | cytosol, nucleus, plastid | 89.02 | 89.02 |
| EES16499 | Sorghum | mitochondrion | 87.86 | 88.37 |
| Os03t0367800-01 | Rice | cytosol, mitochondrion, nucleus | 88.44 | 87.43 |
| TraesCS5D01G156400.2 | Wheat | cytosol, mitochondrion, nucleus | 95.38 | 87.3 |
| KXG22781 | Sorghum | plastid | 36.42 | 66.32 |
| PGSC0003DMT400058037 | Potato | nucleus | 64.74 | 65.5 |
| Solyc03g033480.2.1 | Tomato | nucleus | 64.74 | 65.5 |
| KRG98203 | Soybean | nucleus | 65.32 | 65.32 |
| CDY70943 | Canola | nucleus | 64.16 | 64.91 |
| VIT_08s0007g08060.t01 | Wine grape | mitochondrion | 64.16 | 64.53 |
| KRH30163 | Soybean | nucleus | 64.16 | 64.16 |
| Bra002649.1-P | Field mustard | mitochondrion | 63.01 | 63.74 |
| Bra006766.1-P | Field mustard | nucleus | 63.01 | 63.74 |
| CDY57389 | Canola | mitochondrion | 63.01 | 63.74 |
| CDY32983 | Canola | mitochondrion | 63.01 | 63.74 |
| AT5G37055.1 | Thale cress | mitochondrion | 62.43 | 63.16 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 70.52 | 61.0 |
| CDX99412 | Canola | mitochondrion | 21.39 | 56.92 |
| Bra031327.1-P | Field mustard | mitochondrion | 20.81 | 55.38 |
| CDY40293 | Canola | mitochondrion | 20.81 | 55.38 |
| CDX99372 | Canola | mitochondrion | 20.81 | 55.38 |
| CDY60020 | Canola | cytosol | 41.62 | 54.96 |
| CDX77159 | Canola | mitochondrion | 20.23 | 53.85 |
| Bra032836.1-P | Field mustard | mitochondrion | 36.99 | 49.23 |
Protein Annotations
| MapMan:12.4.4.3 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| GO:GO:0040007 | GO:GO:0042742 | GO:GO:0042802 | GO:GO:0048638 | InterPro:IPR007529 | PFAM:PF04438 |
| PFscan:PS51083 | PANTHER:PTHR13093 | SUPFAM:SSF144232 | EnsemblPlantsGene:TraesCS5B01G149800 | EnsemblPlants:TraesCS5B01G149800.2 | InterPro:Znf_HIT |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:278010276..278012220
Molecular Weight (calculated)
19233.7 Da
IEP (calculated)
8.763
GRAVY (calculated)
-0.752
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEEENPGP FRRTSSRTRR MASRMASALS SSDNRAQAAL ARLDALESDN AGVEVVDLND DEYGSTDGED HVLMQKKQSK NMKRKTRQGK ALEKRAVRSF
101: MDVLQEANLE ALPPHVPTYL RAAVGPPSTS SRRHYCSVCG NSSNYTCPRC GTRFCSCRCQ VIHNDTRCLK FVA
101: MDVLQEANLE ALPPHVPTYL RAAVGPPSTS SRRHYCSVCG NSSNYTCPRC GTRFCSCRCQ VIHNDTRCLK FVA
001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
Arabidopsis Description
SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.