Factsheet for Bra002649.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002649.1-P
Bra006766.1-P
Bra012351.1-P
Bra024548.1-P
Bra030818.1-P
Bra031327.1-P
Bra032836.1-P
Bra034727.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G37055.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G37055.1	Bra034727.1-P	AT3G12810.1	17142478
AT5G37055.1	Bra034727.1-P	AT3G12810.1	17470967
AT5G37055.1	Bra030818.1-P	AT3G33520.1	17142478
AT5G37055.1	Bra030818.1-P	AT3G33520.1	17470967
AT5G37055.1	Bra002649.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra006766.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra031327.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra032836.1-P	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32983	Canola	mitochondrion	99.42	99.42
Bra031327.1-P	Field mustard	mitochondrion	36.84	96.92
Bra006766.1-P	Field mustard	nucleus	94.74	94.74
AT5G37055.1	Thale cress	mitochondrion	92.4	92.4
Bra032836.1-P	Field mustard	mitochondrion	61.4	80.77
KRG98203	Soybean	nucleus	74.85	73.99
KRH30163	Soybean	nucleus	74.27	73.41
VIT_08s0007g08060.t01	Wine grape	mitochondrion	71.34	70.93
PGSC0003DMT400058037	Potato	nucleus	69.59	69.59
Solyc03g033480.2.1	Tomato	nucleus	69.01	69.01
EES16500	Sorghum	cytosol, nucleus, plastid	65.5	64.74
EES16499	Sorghum	mitochondrion	64.33	63.95
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	64.33	63.58
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	64.33	63.58
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	64.91	63.43
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	63.74	63.01
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	70.76	60.5
HORVU5Hr1G047490.2	Barley	plastid	64.33	59.14
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	61.99	56.08
KXG22781	Sorghum	plastid	27.49	49.47

Protein Annotations

EnsemblPlants:Bra002649.1	EnsemblPlants:Bra002649.1-P	EnsemblPlantsGene:Bra002649	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR007529	InterPro:Znf_HIT	PANTHER:PTHR13093	PFAM:PF04438	PFscan:PS51083	SEG:seg
UniParc:UPI0002545351	UniProt:M4CEL8	MapMan:12.4.4.3	:	:	:

Description

AT5G37055 (E=2e-079) ATSWC6, SEF | SEF (SERRATED LEAVES AND EARLY FLOWERING)

Coordinates

chrA10:-:8393815..8394543

Molecular Weight (calculated)

19020.5 Da

IEP (calculated)

8.396

GRAVY (calculated)

-0.637

Length

171 amino acids

Sequence
(BLAST)

001: MEEDMANRRV SSRTRKVATK MAAALTSTDN RTQAAIARLE ALENDNGAVE VVDLNDDEEA SLDEEDDLGY VQKKQQKGSK RKTRQAKALE ARKAPKSFTE
101: LLQEANLESL PSHVPTYLKA AVGPPTSSSR RHFCTVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.