Factsheet for Bra030818.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002649.1-P
Bra006766.1-P
Bra031327.1-P
Bra032836.1-P
Bra034727.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	Bra034727.1-P	AT3G12810.1	17142478
AT3G33520.1	Bra034727.1-P	AT3G12810.1	17470967
AT3G33520.1	Bra002649.1-P	AT5G37055.1	17142478
AT3G33520.1	Bra006766.1-P	AT5G37055.1	17142478
AT3G33520.1	Bra031327.1-P	AT5G37055.1	17142478
AT3G33520.1	Bra032836.1-P	AT5G37055.1	17142478
AT3G33520.1	Bra002649.1-P	AT5G37055.1	17470967
AT3G33520.1	Bra006766.1-P	AT5G37055.1	17470967
AT3G33520.1	Bra031327.1-P	AT5G37055.1	17470967
AT3G33520.1	Bra032836.1-P	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42404	Canola	cytosol	100.0	51.99
AT3G33520.1	Thale cress	cytosol	87.84	46.32
VIT_11s0016g05490.t01	Wine grape	cytosol	69.37	35.57
KRH61849	Soybean	cytosol, nucleus	69.37	35.32
PGSC0003DMT400038724	Potato	cytosol	67.57	34.25
Zm00001d024059_P002	Maize	cytosol	66.22	34.19
Solyc05g018600.2.1	Tomato	cytosol	67.12	34.02
TraesCS1B01G333100.1	Wheat	cytosol	65.77	33.95
TraesCS2A01G585700.1	Wheat	cytosol	65.77	33.95
TraesCS2B01G597500.1	Wheat	cytosol	65.77	33.95
OQU79631	Sorghum	cytosol	65.32	33.56
GSMUA_AchrUn_...	Banana	cytosol	65.77	33.56
HORVU0Hr1G005770.1	Barley	cytosol	64.86	33.49
TraesCS2D01G600800.1	Wheat	cytosol	64.86	33.49
Os01t0269900-01	Rice	cytosol	63.51	32.87
Bra009081.1-P	Field mustard	cytosol	28.83	18.13
Bra006719.1-P	Field mustard	cytosol	27.03	18.07
Bra020319.1-P	Field mustard	cytosol	27.03	17.65
Bra006033.1-P	Field mustard	cytosol	28.83	16.98
Bra028615.1-P	Field mustard	cytosol	28.83	16.98
Bra007025.1-P	Field mustard	cytosol	28.38	16.71
Bra014865.1-P	Field mustard	cytosol	28.38	16.71
Bra034778.1-P	Field mustard	cytosol	27.93	16.45
Bra000010.1-P	Field mustard	cytosol	27.48	16.18
Bra017166.1-P	Field mustard	cytosol	27.48	16.18
Bra033819.1-P	Field mustard	cytosol	27.03	15.92
Bra019486.1-P	Field mustard	cytosol	27.03	15.92
Bra018210.1-P	Field mustard	cytosol	27.03	15.92
Bra022356.1-P	Field mustard	cytosol	22.97	15.79
Bra005178.1-P	Field mustard	cytosol	24.77	15.54
Bra016895.1-P	Field mustard	cytosol	21.17	15.51
Bra007566.1-P	Field mustard	cytosol	21.62	14.63
Bra039097.1-P	Field mustard	cytosol	23.42	13.37
Bra003429.1-P	Field mustard	cytosol	20.72	12.78
Bra025243.1-P	Field mustard	cytosol	20.72	12.57
Bra019815.1-P	Field mustard	cytosol	22.97	11.94
Bra016738.1-P	Field mustard	cytosol	22.97	11.94
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	18.02	11.33
Bra002571.1-P	Field mustard	nucleus	26.58	9.75
Bra003156.1-P	Field mustard	cytosol	7.66	8.25
Bra019816.1-P	Field mustard	nucleus	6.31	3.71

Protein Annotations

Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	InterPro:Actin	InterPro:Arp6	EnsemblPlantsGene:Bra030818
EnsemblPlants:Bra030818.1	EnsemblPlants:Bra030818.1-P	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0006950	GO:GO:0006970
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009266
GO:GO:0009628	GO:GO:0009791	GO:GO:0009845	GO:GO:0009908	GO:GO:0009910	GO:GO:0009987
GO:GO:0016043	UniProt:M4EPU7	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF47	SMART:SM00268
SUPFAM:SSF53067	UniParc:UPI0002546E8D	SEG:seg	:	:	:

Description

AT3G33520 (E=1e-099) ATARP6, ARP6, SUF3, ESD1 | ATARP6; structural constituent of cytoskeleton

Coordinates

chrA08:-:69468..70652

Molecular Weight (calculated)

24957.9 Da

IEP (calculated)

6.036

GRAVY (calculated)

-0.334

Length

222 amino acids

Sequence
(BLAST)

001: MDQTFLMDDA KEKLCFVSLD LHRDLNLARE RRTGNVLKST YVLPDGVTHT KGYVKDPQSA KSFLTLGLSD GGANTVMDKV DVEKKKADMN KNEIDLTNER
101: FLVPETLFQP ADLGMNQAGI AECIVRAVSS CHSYLQPVLY QSIILTGGST LFPQLKERLE RELRPLVPDH FDVKITTQED PILGVWRGGS LLASSPDFES
201: MCVTKAEYEE LGSARCRRRF FH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.