Factsheet for Bra016895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06885	Canola	cytosol	100.0	91.54
Bra009081.1-P	Field mustard	cytosol	75.58	64.87
Bra034778.1-P	Field mustard	cytosol	77.23	62.07
Bra014865.1-P	Field mustard	cytosol	76.57	61.54
Bra007025.1-P	Field mustard	cytosol	76.57	61.54
AT2G42100.1	Thale cress	cytosol	76.57	61.38
Bra005178.1-P	Field mustard	cytosol	71.29	61.02
Bra017166.1-P	Field mustard	cytosol	75.91	61.01
Bra006033.1-P	Field mustard	cytosol	75.58	60.74
Bra033819.1-P	Field mustard	cytosol	75.58	60.74
Bra000010.1-P	Field mustard	cytosol	75.58	60.74
Bra028615.1-P	Field mustard	cytosol	75.58	60.74
Bra018210.1-P	Field mustard	cytosol	75.58	60.74
Bra020319.1-P	Field mustard	cytosol	67.99	60.59
Bra006719.1-P	Field mustard	cytosol	66.34	60.54
Bra019486.1-P	Field mustard	cytosol	75.25	60.48
AT2G42170.3	Thale cress	cytosol	64.36	59.27
Bra003156.1-P	Field mustard	cytosol	39.27	57.77
Bra022356.1-P	Field mustard	cytosol	61.06	57.28
AT2G42090.1	Thale cress	cytosol	65.35	54.1
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	62.71	53.82
Bra002571.1-P	Field mustard	nucleus	75.25	37.69
Bra039097.1-P	Field mustard	cytosol	42.24	32.9
Bra025243.1-P	Field mustard	cytosol	37.95	31.42
Bra003429.1-P	Field mustard	cytosol	34.65	29.17
Bra016738.1-P	Field mustard	cytosol	36.96	26.23
Bra019815.1-P	Field mustard	cytosol	36.3	25.76
Bra007566.1-P	Field mustard	cytosol	24.42	22.56
Bra030818.1-P	Field mustard	cytosol	15.51	21.17
Bra019816.1-P	Field mustard	nucleus	7.92	6.37

Protein Annotations

EnsemblPlants:Bra016895.1	EnsemblPlants:Bra016895.1-P	EnsemblPlantsGene:Bra016895	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin
InterPro:Actin_CS	PANTHER:PTHR11937	PANTHER:PTHR11937:SF266	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00432
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00025438D3	UniProt:M4DK67	MapMan:35.1	:

Description

AT2G42100 (E=9e-080) | actin, putative

Coordinates

chrA04:+:17719517..17721466

Molecular Weight (calculated)

33680.6 Da

IEP (calculated)

5.878

GRAVY (calculated)

-0.230

Length

303 amino acids

Sequence
(BLAST)

001: MVPIVCDNGT GMVKAGLARD DEPSAVFPSI AGRPRHMEQI NNWDDMEKIW HHTFYNELRV APEKHPVLLG EAPLTPKANR EKITQIMFET FGVPKLYVAN
101: EAILSLYASG RTTGIVVDSG DGVSHTVPIF EGYPLPQAIS RLDLAGRDIT DYLTKIMMER GYTYTTTAER EVVRDIKEKL GYIALDHDQE MKKATASSAI
201: DRTYELPDGQ VCDVDIRKDL FGNIVLSGGT TMFPGIADRM SKEMAAVAPA GMKLKHVVGF ERKNINVWIG GAILASLDSF QQMWVTKAEY DENGPGIIHR
301: KCF

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.