Factsheet for Bra020319.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48688	Canola	cytosol	100.0	100.0
CDY53444	Canola	cytosol	100.0	90.19
Bra033819.1-P	Field mustard	cytosol	99.41	89.66
Bra018210.1-P	Field mustard	cytosol	99.41	89.66
Bra019486.1-P	Field mustard	cytosol	99.12	89.39
AT5G59370.2	Thale cress	cytosol	98.53	88.86
Bra006719.1-P	Field mustard	cytosol	86.18	88.25
VIT_13s0019g01240.t01	Wine grape	cytosol	96.47	87.0
KRH10268	Soybean	mitochondrion, nucleus	96.47	87.0
Bra007025.1-P	Field mustard	cytosol	96.47	87.0
Bra003156.1-P	Field mustard	cytosol	52.65	86.89
Bra000010.1-P	Field mustard	cytosol	96.18	86.74
KRH38098	Soybean	cytosol	96.18	86.74
Bra014865.1-P	Field mustard	cytosol	96.18	86.74
Bra017166.1-P	Field mustard	cytosol	95.88	86.47
KRH71847	Soybean	endoplasmic reticulum, nucleus	95.88	86.47
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	95.88	86.47
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.88	86.47
Bra034778.1-P	Field mustard	cytosol	95.88	86.47
VIT_06s0004g04570.t01	Wine grape	cytosol	95.59	86.44
KRG93168	Soybean	mitochondrion, nucleus	95.59	86.21
KRH70465	Soybean	mitochondrion, nucleus	95.59	86.21
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.59	86.21
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.59	86.21
KRH01660	Soybean	mitochondrion, nucleus	95.59	86.21
KRG95386	Soybean	cytosol	95.59	86.21
GSMUA_AchrUn_...	Banana	plasma membrane	95.59	86.21
VIT_08s0007g06520.t01	Wine grape	cytosol	95.29	85.94
Bra005178.1-P	Field mustard	cytosol	89.12	85.59
Bra009081.1-P	Field mustard	cytosol	88.53	85.27
Bra028615.1-P	Field mustard	cytosol	93.82	84.62
Solyc09g010750.1.1	Tomato	cytosol	44.41	84.36
Bra006033.1-P	Field mustard	cytosol	93.24	84.08
Solyc10g086460.1.1	Tomato	unclear	93.24	84.08
GSMUA_Achr10P...	Banana	cytosol	65.0	84.03
PGSC0003DMT400049429	Potato	cytosol	92.94	83.82
PGSC0003DMT400023026	Potato	cytosol	92.65	83.55
GSMUA_Achr7P18630_001	Banana	cytosol	76.18	80.94
Bra022356.1-P	Field mustard	cytosol	75.29	79.26
KRH24799	Soybean	cytosol	90.88	75.37
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	75.59	72.8
Bra016895.1-P	Field mustard	cytosol	60.59	67.99
Bra002571.1-P	Field mustard	nucleus	99.12	55.7
Bra039097.1-P	Field mustard	cytosol	43.24	37.79
Bra025243.1-P	Field mustard	cytosol	40.29	37.43
Bra003429.1-P	Field mustard	cytosol	37.94	35.83
Bra007566.1-P	Field mustard	cytosol	28.82	29.88
Bra016738.1-P	Field mustard	cytosol	37.06	29.51
Bra019815.1-P	Field mustard	cytosol	36.47	29.04
Bra030818.1-P	Field mustard	cytosol	17.65	27.03
Bra019816.1-P	Field mustard	nucleus	11.47	10.34

Protein Annotations

EnsemblPlants:Bra020319.1	EnsemblPlants:Bra020319.1-P	EnsemblPlantsGene:Bra020319	Gene3D:3.30.420.40	Gene3D:3.90.640.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS
PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00432	ScanProsite:PS01132
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000254366D	UniProt:M4DUX6	MapMan:20.2.1	:

Description

AT3G46520 (E=6e-155) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton

Coordinates

chrA02:-:6184335..6185995

Molecular Weight (calculated)

37302.8 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.177

Length

340 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKREHPVLL TEAPLNPKAN REKMTQIMFE TFNAPAMYVA
101: IQAVLSLYAS GRTTGIVLDS GDGVSHTVPI YEGYALPHAI LRLDLAGRDL TDYLMKILTE RGYSFTTTAE REIVRDMKEK LSYIALDYEQ ELETSNTSSS
201: VDKSFELPDG QVITIGAERF RCPEVLFQPS MIGMENPGIH ETTYNSIMKC DVDIRKDLYG NIVLSGGTTM FGGIGDRMSK EITALAPSSM KIKVVAPPER
301: KYSVWIGGSI LASLSTFQQM WIAKAEYDES GPSIVHRKCF

Best Arabidopsis Sequence Match ( AT3G12110.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.