Factsheet for Bra017166.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000010.1-P
Bra005178.1-P
Bra017166.1-P
Bra039198.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	Bra039198.1-P	AT2G23420.1	21798944
AT2G37620.1	Bra000010.1-P	AT2G37620.1	21798944
AT2G37620.1	Bra005178.1-P	AT2G37620.1	21798944
AT2G37620.1	Bra017166.1-P	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65255	Canola	cytosol	87.53	99.7
Bra000010.1-P	Field mustard	cytosol	99.2	99.2
Bra007025.1-P	Field mustard	cytosol	98.94	98.94
Bra014865.1-P	Field mustard	cytosol	98.67	98.67
AT2G37620.1	Thale cress	cytosol	98.41	98.41
Bra005178.1-P	Field mustard	cytosol	92.31	98.31
GSMUA_AchrUn_...	Banana	plasma membrane	97.08	97.08
GSMUA_Achr10P...	Banana	cytosol	67.37	96.58
KRH38098	Soybean	cytosol	96.55	96.55
Bra033819.1-P	Field mustard	cytosol	96.55	96.55
KRH71847	Soybean	endoplasmic reticulum, nucleus	96.29	96.29
Bra019486.1-P	Field mustard	cytosol	96.29	96.29
Bra018210.1-P	Field mustard	cytosol	96.29	96.29
VIT_06s0004g04570.t01	Wine grape	cytosol	95.76	96.01
Bra020319.1-P	Field mustard	cytosol	86.47	95.88
Bra006719.1-P	Field mustard	cytosol	84.35	95.78
KRH10268	Soybean	mitochondrion, nucleus	95.76	95.76
VIT_13s0019g01240.t01	Wine grape	cytosol	95.76	95.76
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.49	95.49
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	95.49	95.49
KRG95386	Soybean	cytosol	95.49	95.49
KRH70465	Soybean	mitochondrion, nucleus	95.23	95.23
VIT_08s0007g06520.t01	Wine grape	cytosol	95.23	95.23
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.23	95.23
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.23	95.23
KRH01660	Soybean	mitochondrion, nucleus	95.23	95.23
KRG93168	Soybean	mitochondrion, nucleus	95.23	95.23
Bra034778.1-P	Field mustard	cytosol	94.96	94.96
Bra028615.1-P	Field mustard	cytosol	94.69	94.69
Bra009081.1-P	Field mustard	cytosol	88.33	94.33
Bra006033.1-P	Field mustard	cytosol	94.16	94.16
PGSC0003DMT400023026	Potato	cytosol	93.9	93.9
PGSC0003DMT400049429	Potato	cytosol	92.84	92.84
Solyc10g086460.1.1	Tomato	unclear	92.84	92.84
GSMUA_Achr7P18630_001	Banana	cytosol	78.51	92.5
Bra003156.1-P	Field mustard	cytosol	49.87	91.26
Bra022356.1-P	Field mustard	cytosol	76.66	89.47
Solyc09g010750.1.1	Tomato	cytosol	40.85	86.03
KRH24799	Soybean	cytosol	90.98	83.66
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	76.39	81.59
Bra016895.1-P	Field mustard	cytosol	61.01	75.91
Bra002571.1-P	Field mustard	nucleus	96.02	59.83
Bra039097.1-P	Field mustard	cytosol	44.3	42.93
Bra025243.1-P	Field mustard	cytosol	41.11	42.35
Bra003429.1-P	Field mustard	cytosol	36.87	38.61
Bra016738.1-P	Field mustard	cytosol	37.67	33.26
Bra019815.1-P	Field mustard	cytosol	37.14	32.79
Bra007566.1-P	Field mustard	cytosol	27.32	31.4
Bra030818.1-P	Field mustard	cytosol	16.18	27.48
Bra019816.1-P	Field mustard	nucleus	10.88	10.88

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS
EnsemblPlantsGene:Bra017166	EnsemblPlants:Bra017166.1	EnsemblPlants:Bra017166.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	UniProt:M4DKY5	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432
ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000254461A

Description

AT2G37620 (E=1e-217) ACT1, AAc1 | ACT1 (ACTIN 1); structural constituent of cytoskeleton

Coordinates

chrA04:+:16229901..16231190

Molecular Weight (calculated)

41879.3 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.217

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA FMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TANTSSSVEK NYEMPDGQVI TIGAERFRCP EVLYQQSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.