Factsheet for Bra016738.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010847.1-P
Bra017996.1-P
Bra025243.1-P
Bra030221.1-P
Bra039097.1-P
Bra039922.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	Bra010847.1-P	AT1G29170.1	17267444
AT1G13180.1	Bra030221.1-P	AT2G22640.1	17267444
AT1G13180.1	Bra039922.1-P	AT2G22640.1	17267444
AT1G13180.1	Bra025243.1-P	AT3G27000.1	17267444
AT1G13180.1	Bra039097.1-P	AT3G27000.1	17267444
AT1G13180.1	Bra017996.1-P	AT3G49290.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21087	Canola	cytosol	99.77	99.77
Bra019815.1-P	Field mustard	cytosol	97.66	97.66
AT1G13180.1	Thale cress	cytosol	94.85	94.85
VIT_01s0137g00280.t01	Wine grape	cytosol	85.48	85.28
KRH59228	Soybean	nucleus	84.31	84.11
PGSC0003DMT400027956	Potato	cytosol	83.37	82.6
Solyc05g013940.2.1	Tomato	cytosol	82.67	82.28
Solyc04g024530.2.1	Tomato	cytosol	81.97	81.59
GSMUA_Achr6P21120_001	Banana	cytosol	80.8	80.8
Os02t0596900-01	Rice	cytosol	80.33	80.14
TraesCS6D01G194100.1	Wheat	cytosol	79.86	79.86
TraesCS6A01G211000.1	Wheat	cytosol	79.86	79.86
TraesCS6B01G240500.1	Wheat	cytosol	79.63	79.63
KRH59222	Soybean	cytosol	35.6	79.17
GSMUA_Achr9P07630_001	Banana	cytosol	78.45	78.27
Zm00001d017106_P001	Maize	cytosol	78.69	77.6
GSMUA_Achr2P05970_001	Banana	cytosol	31.85	76.84
KXG30555	Sorghum	cytosol	77.75	76.67
HORVU6Hr1G053910.4	Barley	cytosol	77.28	74.66
Zm00001d050981_P001	Maize	cytosol	77.52	72.11
GSMUA_Achr8P01270_001	Banana	cytosol	70.49	70.49
GSMUA_Achr2P05960_001	Banana	cytosol	50.35	70.26
KXG24330	Sorghum	cytosol	71.43	70.11
Zm00001d049629_P002	Maize	nucleus	59.02	68.48
TraesCS7A01G311700.1	Wheat	cytosol	67.92	66.51
TraesCS7B01G211500.1	Wheat	cytosol	67.45	66.06
TraesCS7D01G308200.1	Wheat	cytosol	67.92	64.3
HORVU7Hr1G074460.5	Barley	cytosol	65.34	63.99
Os08t0128300-01	Rice	cytosol	26.7	63.33
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	29.74	54.98
Bra009081.1-P	Field mustard	cytosol	32.08	38.81
Bra005178.1-P	Field mustard	cytosol	32.08	38.7
Bra022356.1-P	Field mustard	cytosol	29.27	38.7
Bra006719.1-P	Field mustard	cytosol	29.98	38.55
Bra006033.1-P	Field mustard	cytosol	33.96	38.46
Bra000010.1-P	Field mustard	cytosol	33.72	38.2
Bra018210.1-P	Field mustard	cytosol	33.72	38.2
Bra019486.1-P	Field mustard	cytosol	33.72	38.2
Bra028615.1-P	Field mustard	cytosol	33.72	38.2
Bra033819.1-P	Field mustard	cytosol	33.72	38.2
Bra034778.1-P	Field mustard	cytosol	33.72	38.2
Bra014865.1-P	Field mustard	cytosol	33.49	37.93
Bra007025.1-P	Field mustard	cytosol	33.49	37.93
Bra017166.1-P	Field mustard	cytosol	33.26	37.67
Bra020319.1-P	Field mustard	cytosol	29.51	37.06
Bra016895.1-P	Field mustard	cytosol	26.23	36.96
Bra003156.1-P	Field mustard	cytosol	17.1	35.44
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	27.4	33.14
Bra025243.1-P	Field mustard	cytosol	27.4	31.97
Bra039097.1-P	Field mustard	cytosol	29.04	31.88
Bra003429.1-P	Field mustard	cytosol	23.18	27.5
Bra002571.1-P	Field mustard	nucleus	33.72	23.8
Bra007566.1-P	Field mustard	cytosol	17.8	23.17
Bra030818.1-P	Field mustard	cytosol	11.94	22.97
Bra019816.1-P	Field mustard	nucleus	15.22	17.24

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp3	EnsemblPlantsGene:Bra016738
EnsemblPlants:Bra016738.1	EnsemblPlants:Bra016738.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034314	UniProt:M4DJR0	PFAM:PF00022
PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002545E6C	SEG:seg

Description

AT1G13180 (E=6e-235) DIS1, ARP3, ATARP3 | DIS1 (DISTORTED TRICHOMES 1); ATP binding / actin binding / protein binding / structural constituent of cytoskeleton

Coordinates

chrA08:-:19755671..19758184

Molecular Weight (calculated)

47492.4 Da

IEP (calculated)

5.211

GRAVY (calculated)

-0.238

Length

427 amino acids

Sequence
(BLAST)

001: MDPTSRPAVV IDNGTGYTKM GFAGNVEPCF ILPSVVAANE SFLSQPKSSL KGTWAAQHNA GVAADMDFFI GDEALAKSRS SSTYNLRYPI EHGQVEDWDA
101: MERYWQQCVF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATRVVPVA EGYVIASCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE YNKHDKEPGK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FITSLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQKFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE ECGASICRTN PVFKGMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.