Factsheet for Solyc05g013940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g076840.2.1
Solyc02g094320.2.1
Solyc03g043720.2.1
Solyc03g083030.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	Solyc02g076840.2.1	AT1G29170.1	17267444
AT1G13180.1	Solyc03g043720.2.1	AT2G22640.1	17267444
AT1G13180.1	Solyc02g094320.2.1	AT3G27000.1	17267444
AT1G13180.1	Solyc03g083030.2.1	AT3G49290.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027956	Potato	cytosol	98.83	98.38
Solyc04g024530.2.1	Tomato	cytosol	91.61	91.61
VIT_01s0137g00280.t01	Wine grape	cytosol	91.38	91.59
KRH59228	Soybean	nucleus	86.25	86.45
Os02t0596900-01	Rice	cytosol	85.31	85.51
TraesCS6A01G211000.1	Wheat	cytosol	84.85	85.25
TraesCS6D01G194100.1	Wheat	cytosol	84.85	85.25
TraesCS6B01G240500.1	Wheat	cytosol	84.62	85.01
GSMUA_Achr6P21120_001	Banana	cytosol	84.38	84.78
GSMUA_Achr9P07630_001	Banana	cytosol	84.15	84.35
AT1G13180.1	Thale cress	cytosol	83.92	84.31
CDX98005	Canola	cytosol	82.98	83.37
Bra019815.1-P	Field mustard	cytosol	82.98	83.37
CDY19392	Canola	cytosol	82.52	82.9
Bra016738.1-P	Field mustard	cytosol	82.28	82.67
GSMUA_Achr2P05970_001	Banana	cytosol	34.03	82.49
CDY21087	Canola	cytosol	82.05	82.44
CDY34585	Canola	cytosol	81.82	82.2
Zm00001d017106_P001	Maize	cytosol	82.28	81.52
KXG30555	Sorghum	cytosol	81.59	80.83
HORVU6Hr1G053910.4	Barley	cytosol	82.52	80.09
Zm00001d050981_P001	Maize	cytosol	80.89	75.6
KRH59222	Soybean	cytosol	33.8	75.52
GSMUA_Achr2P05960_001	Banana	cytosol	53.38	74.84
GSMUA_Achr8P01270_001	Banana	cytosol	72.49	72.83
KXG24330	Sorghum	cytosol	73.19	72.18
Zm00001d049629_P002	Maize	nucleus	60.14	70.11
TraesCS7A01G311700.1	Wheat	cytosol	69.93	68.81
TraesCS7B01G211500.1	Wheat	cytosol	69.46	68.35
TraesCS7D01G308200.1	Wheat	cytosol	69.93	66.52
HORVU7Hr1G074460.5	Barley	cytosol	67.37	66.28
Os08t0128300-01	Rice	cytosol	27.04	64.44
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	31.24	58.01
Solyc04g071260.2.1	Tomato	plastid	35.66	40.58
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	35.2	40.05
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	35.2	40.05
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	35.2	40.05
Solyc10g086460.1.1	Tomato	unclear	34.97	39.79
Solyc06g076090.2.1	Tomato	unclear	34.97	39.79
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	34.97	39.79
Solyc11g005330.1.1	Tomato	nucleus	34.5	39.26
Solyc03g078400.2.1	Tomato	nucleus, plastid	34.5	39.26
Solyc01g104770.2.1	Tomato	nucleus	34.27	38.99
Solyc09g010750.1.1	Tomato	cytosol	15.38	36.87
Solyc02g094320.2.1	Tomato	cytosol	32.17	35.48
Solyc11g008500.1.1	Tomato	cytosol, nucleus	24.01	28.61
Solyc12g037980.1.1	Tomato	nucleus	28.44	28.05
Solyc05g018600.2.1	Tomato	cytosol	23.31	22.83

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp3	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0034314	UniProt:K4BYB5	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268
SUPFAM:SSF53067	EnsemblPlantsGene:Solyc05g013940.2	EnsemblPlants:Solyc05g013940.2.1	UniParc:UPI00027662A4	:	:

Description

No Description!

Coordinates

chr5:-:7411274..7417285

Molecular Weight (calculated)

47930.9 Da

IEP (calculated)

6.017

GRAVY (calculated)

-0.256

Length

429 amino acids

Sequence
(BLAST)

001: MDPATSRPAL VIDNGTGYTK LGFAGNVEPS FILPTVVAVN ESFVNQTRAT TKNSNWLAQH SAGVMADLDF FVGEEAVTRS KSSNTYNLSY PIKHGQVDNW
101: DAMERFWQQC IFNYLRCDPE DHYFLLTESP MTAPESREYT GEIMFETFNI PGLYIAVQPV LALAAGYTTS KCEMTGVVVD IGDGATHVVP VADGYVIGSS
201: IKSIPIAGRD VTLFIQQLMR ERGEHVPPED SFEVARKVKE MYCYTCSDIV KEFNKHDKEP GKYIKHWRGT KPKTGAPYSC DVGYERFLGP EVFFNPEIYN
301: SDFTTPLPDV IDNCIQSAPI DTRRALYKNI VLSGGSTMFK DFHRRLQRDI KKIVDARVLA SDARLGGNVK AQPVEVNVVS HPIQRYAVWF GGSVLASTPE
401: FFAACHTKAE YEEYGASICR TNPVFKGMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.