Subcellular Localization
min:
: max
Winner_takes_all: unclear, plastid, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
- cytoskeleton 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
22908117
unclear: 26455813 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400060225 | Potato | cytosol | 99.47 | 99.47 |
Solyc10g080500.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 98.67 | 98.67 |
Solyc04g011500.2.1 | Tomato | extracellular, nucleus, plastid, unclear | 98.67 | 98.67 |
Solyc11g065990.1.1 | Tomato | nucleus, plastid, unclear | 97.88 | 97.88 |
Solyc06g076090.2.1 | Tomato | unclear | 97.61 | 97.61 |
KRH01660 | Soybean | mitochondrion, nucleus | 97.35 | 97.35 |
KRH70465 | Soybean | mitochondrion, nucleus | 97.35 | 97.35 |
VIT_13s0019g01240.t01 | Wine grape | cytosol | 97.08 | 97.08 |
KRH56507 | Soybean | endoplasmic reticulum, mitochondrion | 96.82 | 96.82 |
KRG93168 | Soybean | mitochondrion, nucleus | 96.55 | 96.55 |
Solyc03g078400.2.1 | Tomato | nucleus, plastid | 95.23 | 95.23 |
Solyc01g104770.2.1 | Tomato | nucleus | 94.96 | 94.96 |
Solyc10g086460.1.1 | Tomato | unclear | 94.96 | 94.96 |
Solyc11g005330.1.1 | Tomato | nucleus | 94.96 | 94.96 |
Solyc04g071260.2.1 | Tomato | plastid | 90.98 | 90.98 |
Solyc09g010750.1.1 | Tomato | cytosol | 41.11 | 86.59 |
Solyc02g094320.2.1 | Tomato | cytosol | 44.3 | 42.93 |
Solyc11g008500.1.1 | Tomato | cytosol, nucleus | 38.2 | 40.0 |
Solyc12g037980.1.1 | Tomato | nucleus | 44.03 | 38.16 |
Solyc04g024530.2.1 | Tomato | cytosol | 39.79 | 34.97 |
Solyc05g013940.2.1 | Tomato | cytosol | 39.79 | 34.97 |
Solyc05g018600.2.1 | Tomato | cytosol | 32.36 | 27.85 |
Protein Annotations
MapMan:20.2.1 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Actin | InterPro:Actin/actin-like_CS | InterPro:Actin_CS |
GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | UniProt:K4C2C6 | PFAM:PF00022 |
PRINTS:PR00190 | ScanProsite:PS00406 | ScanProsite:PS00432 | ScanProsite:PS01132 | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF276 |
SMART:SM00268 | SUPFAM:SSF53067 | EnsemblPlantsGene:Solyc05g054480.2 | EnsemblPlants:Solyc05g054480.2.1 | UniParc:UPI0002766AE6 | SEG:seg |
Description
No Description!
Coordinates
chr5:-:64402912..64406079
Molecular Weight (calculated)
41723.1 Da
IEP (calculated)
5.292
GRAVY (calculated)
-0.185
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTSAEREI VRDVKEKLSY IALDFEQELE TSKTSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKELT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTSAEREI VRDVKEKLSY IALDFEQELE TSKTSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKELT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.