CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 25806999
nucleus: 27291164

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93168
KRG95386
KRH01660
KRH04597
KRH10268
KRH23061
KRH24799
KRH28456
KRH29804
KRH38098
KRH56507
KRH57934
KRH63322
KRH67068
KRH70465
KRH71847
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	KRH04597	AT2G23420.1	21798944
AT2G37620.1	KRH28456	AT2G23420.1	21798944
AT2G37620.1	KRH57934	AT2G23420.1	21798944
AT2G37620.1	KRH63322	AT2G23420.1	21798944
AT2G37620.1	KRH77015	AT2G23420.1	21798944
AT2G37620.1	KRG93168	AT2G37620.1	21798944
AT2G37620.1	KRG95386	AT2G37620.1	21798944
AT2G37620.1	KRH01660	AT2G37620.1	21798944
AT2G37620.1	KRH10268	AT2G37620.1	21798944
AT2G37620.1	KRH23061	AT2G37620.1	21798944
AT2G37620.1	KRH24799	AT2G37620.1	21798944
AT2G37620.1	KRH29804	AT2G37620.1	21798944
AT2G37620.1	KRH38098	AT2G37620.1	21798944
AT2G37620.1	KRH56507	AT2G37620.1	21798944
AT2G37620.1	KRH67068	AT2G37620.1	21798944
AT2G37620.1	KRH70465	AT2G37620.1	21798944
AT2G37620.1	KRH71847	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	99.73	99.73
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	97.61	97.61
KRH01660	Soybean	mitochondrion, nucleus	97.61	97.61
PGSC0003DMT400071331	Potato	cytosol	97.35	97.35
KRH70465	Soybean	mitochondrion, nucleus	97.35	97.35
KRH10268	Soybean	mitochondrion, nucleus	97.35	97.35
GSMUA_Achr10P...	Banana	cytosol	67.64	96.96
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.82	96.82
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.82	96.82
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.82	96.82
KRG95386	Soybean	cytosol	96.82	96.82
AT3G12110.1	Thale cress	cytosol	96.55	96.55
VIT_13s0019g01240.t01	Wine grape	cytosol	96.55	96.55
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	96.55	96.55
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	96.55	96.55
PGSC0003DMT400077954	Potato	cytosol	96.29	96.29
KRH59535	Soybean	cytosol	96.29	96.29
KRH43389	Soybean	cytosol	96.29	96.29
GSMUA_AchrUn_...	Banana	plasma membrane	96.29	96.29
Bra033819.1-P	Field mustard	cytosol	96.02	96.02
AT2G37620.1	Thale cress	cytosol	96.02	96.02
AT3G46520.2	Thale cress	cytosol	96.02	96.02
AT3G53750.2	Thale cress	cytosol	96.02	96.02
Bra000010.1-P	Field mustard	cytosol	96.02	96.02
PGSC0003DMT400060225	Potato	cytosol	96.02	96.02
KRH64098	Soybean	cytosol	96.02	96.02
KRH38098	Soybean	cytosol	96.02	96.02
CDX82985	Canola	cytosol	96.02	96.02
CDX74944	Canola	cytosol	95.76	95.76
Bra018210.1-P	Field mustard	cytosol	95.76	95.76
Bra014865.1-P	Field mustard	cytosol	95.76	95.76
Bra007025.1-P	Field mustard	cytosol	95.76	95.76
Bra019486.1-P	Field mustard	cytosol	95.76	95.76
CDX78202	Canola	cytosol	95.76	95.76
CDX76191	Canola	cytosol	95.76	95.76
CDY53444	Canola	cytosol	95.76	95.76
KRH71847	Soybean	endoplasmic reticulum, nucleus	95.76	95.76
CDY38066	Canola	cytosol	95.76	95.76
CDX71119	Canola	cytosol	95.76	95.76
CDY21777	Canola	cytosol	95.76	95.76
AT5G59370.2	Thale cress	cytosol	95.76	95.76
Solyc06g076090.2.1	Tomato	unclear	95.76	95.76
CDY01102	Canola	cytosol	95.76	95.76
CDX99111	Canola	cytosol	95.76	95.76
Bra034778.1-P	Field mustard	cytosol	95.76	95.76
CDX86081	Canola	cytosol	95.76	95.76
CDX91373	Canola	cytosol	95.76	95.76
CDX88698	Canola	cytosol	95.76	95.76
Bra020319.1-P	Field mustard	cytosol	86.21	95.59
CDY48688	Canola	cytosol	86.21	95.59
CDY08455	Canola	cytosol	95.49	95.49
Bra006719.1-P	Field mustard	cytosol	84.08	95.48
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	84.08	95.48
CDX73527	Canola	cytosol	89.39	95.47
CDY07779	Canola	cytosol	89.12	95.45
CDY30846	Canola	cytosol	95.23	95.23
Bra017166.1-P	Field mustard	cytosol	95.23	95.23
Bra005178.1-P	Field mustard	cytosol	89.12	94.92
CDX93360	Canola	cytosol	83.29	94.86
CDY65255	Canola	cytosol	83.29	94.86
PGSC0003DMT400001169	Potato	cytosol	94.43	94.18
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.37	93.37
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.1	93.1
GSMUA_Achr7P18630_001	Banana	cytosol	78.78	92.81
CDX94448	Canola	cytosol	93.37	90.96
CDX79746	Canola	cytosol	89.12	90.32
Bra003156.1-P	Field mustard	cytosol	49.07	89.81
KRH24799	Soybean	cytosol	92.84	85.37
CDY71336	Canola	cytosol	55.44	76.0
CDX67573	Canola	cytosol	56.23	69.74
Bra002571.1-P	Field mustard	nucleus	95.49	59.5
CDY33033	Canola	nucleus	78.25	54.53
CDX80274	Canola	nucleus	76.92	52.82
KRG94584	Soybean	cytosol	43.24	41.9
KRH06905	Soybean	cytosol	42.71	41.39
KRH13968	Soybean	cytosol, nucleus	37.14	38.78
KRH32953	Soybean	cytosol	36.87	38.5
KRH23861	Soybean	cytosol, nucleus	36.87	38.5
KRH39934	Soybean	cytosol	33.69	38.48
KRH66446	Soybean	nucleus	43.5	36.85
KRH48882	Soybean	nucleus	42.97	36.32
KRH41617	Soybean	nucleus	40.85	35.73
KRH59222	Soybean	cytosol	17.77	34.9
KRH59228	Soybean	nucleus	37.67	33.18
KRH61849	Soybean	cytosol, nucleus	32.89	28.44

Protein Annotations

EntrezGene:100799890	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EMBL:ACUP02011541	InterPro:Actin
InterPro:Actin/actin-like_CS	InterPro:Actin_CS	EnsemblPlantsGene:GLYMA_19G000900	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	UniProt:I1N5M7	EnsemblPlants:KRG93168	ProteinID:KRG93168	ProteinID:KRG93168.1	PFAM:PF00022
PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF355
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000233E72E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:69366..73143

Molecular Weight (calculated)

41725.1 Da

IEP (calculated)

5.162

GRAVY (calculated)

-0.190

Length

377 amino acids

Sequence
(BLAST)

001: MADAEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLGGRDLTDF LMKILTERGY
201: SFTTSAEREI VRDMKEKLAY IALDYEQELE TSKTSSSVEK SYELPDGQVI TIGAERFRCP EVLYQPSMVG MEASGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIS ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.