Factsheet for PGSC0003DMT400001169

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	97.09	97.35
PGSC0003DMT400077954	Potato	cytosol	97.09	97.35
PGSC0003DMT400060953	Potato	cytosol	97.09	97.35
PGSC0003DMT400060225	Potato	cytosol	96.3	96.55
PGSC0003DMT400071331	Potato	cytosol	96.03	96.29
VIT_13s0019g01240.t01	Wine grape	cytosol	95.77	96.02
KRH01660	Soybean	mitochondrion, nucleus	95.5	95.76
KRH70465	Soybean	mitochondrion, nucleus	95.5	95.76
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	94.44	94.69
PGSC0003DMT400010174	Potato	cytosol	94.44	94.69
KRG93168	Soybean	mitochondrion, nucleus	94.18	94.43
PGSC0003DMT400047481	Potato	cytosol	94.18	94.43
PGSC0003DMT400076499	Potato	cytosol	47.88	93.78
PGSC0003DMT400049429	Potato	cytosol	93.12	93.37
PGSC0003DMT400023026	Potato	cytosol	92.59	92.84
PGSC0003DMT400076501	Potato	cytosol	45.24	85.5
PGSC0003DMT400087294	Potato	mitochondrion	56.08	77.37
PGSC0003DMT400022210	Potato	cytosol	66.93	68.75
PGSC0003DMT400022205	Potato	cytosol	65.34	67.49
PGSC0003DMT400074882	Potato	cytosol	65.87	67.3
PGSC0003DMT400074887	Potato	cytosol	62.96	64.32
PGSC0003DMT400088088	Potato	cytosol	31.48	61.34
PGSC0003DMT400052197	Potato	cytosol	43.65	41.35
PGSC0003DMT400019210	Potato	cytosol	38.1	40.0
PGSC0003DMT400056033	Potato	cytosol	43.65	37.93
PGSC0003DMT400027956	Potato	cytosol	39.68	34.8
PGSC0003DMT400038724	Potato	cytosol	31.48	27.17

Protein Annotations

EntrezGene:102590523	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	ProteinID:AAB40099	ProteinID:AAB40099.1
ProteinID:AAB40101	ProteinID:AAB40101.1	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	UniProt:M0ZI08	PFAM:PF00022	EnsemblPlantsGene:PGSC0003DMG400000439	PGSC:PGSC0003DMG400000439
EnsemblPlants:PGSC0003DMT400001169	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937
PANTHER:PTHR11937:SF276	SMART:SM00268	SUPFAM:SSF53067	EMBL:U60486	EMBL:U60488	UniParc:UPI0002959A9F
RefSeq:XP_006348992.1	:	:	:	:	:

Description

Actin-11 [Source:PGSC_GENE;Acc:PGSC0003DMG400000439]

Coordinates

chr11:-:38554343..38556764

Molecular Weight (calculated)

41851.3 Da

IEP (calculated)

5.441

GRAVY (calculated)

-0.178

Length

378 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILSLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVMDSGDG VSHTVPIYEG YALPHAILRL NLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDVKEKLSY IALDYEQEII DTTSSSKTVE KTYELPDGQV ITIGAERFRC PEVLFQPSII GMEAAGIHET TYNSIMKCDV DIRKDLYGNI
301: VLSGGTTMFP GIADRMSKEI TALAPSSMKI KVVAPPERKY SVWIGGSILA SLSTFQQMWI AKAEYDESGP SIVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.