Factsheet for PGSC0003DMT400056033

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g037980.1.1	Tomato	nucleus	98.85	98.85
KRH66446	Soybean	nucleus	86.9	84.94
KRH48882	Soybean	nucleus	85.98	83.86
KRH41617	Soybean	nucleus	81.38	82.13
CDX96721	Canola	cytosol	78.85	78.31
CDX83847	Canola	cytosol	78.62	77.9
CDY26159	Canola	cytosol	78.85	77.6
AT1G18450.1	Thale cress	cytosol	78.62	77.55
CDY19213	Canola	cytosol	78.62	77.38
EER93001	Sorghum	cytosol	75.4	74.04
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	80.46	74.0
Os08t0137200-01	Rice	nucleus	74.94	73.59
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	74.71	73.36
TraesCS5D01G364800.1	Wheat	cytosol	74.02	72.69
TraesCS5B01G358500.1	Wheat	cytosol	74.02	72.69
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	73.79	72.46
TraesCS6B01G189000.1	Wheat	cytosol	73.1	71.78
TraesCS6D01G149800.1	Wheat	cytosol	72.41	71.11
TraesCS6A01G162300.2	Wheat	cytosol	72.18	70.88
HORVU6Hr1G032610.8	Barley	cytosol	73.1	66.11
VIT_17s0000g04010.t01	Wine grape	mitochondrion	65.29	64.25
HORVU5Hr1G088030.1	Barley	plastid	74.02	63.39
PGSC0003DMT400060225	Potato	cytosol	38.62	44.56
PGSC0003DMT400060953	Potato	cytosol	38.16	44.03
PGSC0003DMT400077954	Potato	cytosol	38.16	44.03
PGSC0003DMT400071331	Potato	cytosol	37.93	43.77
PGSC0003DMT400001169	Potato	cytosol	37.93	43.65
PGSC0003DMT400010174	Potato	cytosol	37.7	43.5
PGSC0003DMT400047481	Potato	cytosol	37.7	43.5
PGSC0003DMT400076501	Potato	cytosol	20.0	43.5
PGSC0003DMT400087294	Potato	mitochondrion	26.67	42.34
PGSC0003DMT400049429	Potato	cytosol	36.55	42.18
PGSC0003DMT400023026	Potato	cytosol	36.32	41.91
PGSC0003DMT400076499	Potato	cytosol	17.93	40.41
PGSC0003DMT400088088	Potato	cytosol	17.01	38.14
PGSC0003DMT400022205	Potato	cytosol	31.95	37.98
PGSC0003DMT400074882	Potato	cytosol	32.18	37.84
PGSC0003DMT400022210	Potato	cytosol	31.72	37.5
PGSC0003DMT400074887	Potato	cytosol	30.57	35.95
PGSC0003DMT400052197	Potato	cytosol	28.05	30.58
PGSC0003DMT400019210	Potato	cytosol	23.68	28.61
PGSC0003DMT400027956	Potato	cytosol	28.05	28.31
PGSC0003DMT400038724	Potato	cytosol	23.91	23.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400056033	EnsemblPlantsGene:PGSC0003DMG400021766	EntrezGene:102600647	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin
PANTHER:PTHR11937	PANTHER:PTHR11937:SF274	PFAM:PF00022	PGSC:PGSC0003DMG400021766	PRINTS:PR00190	RefSeq:XP_006362361.1
SEG:seg	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000295AC89	UniProt:M1BYV2	MapMan:12.4.6.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021766]

Coordinates

chr12:+:41667602..41684817

Molecular Weight (calculated)

47775.6 Da

IEP (calculated)

4.722

GRAVY (calculated)

-0.306

Length

435 amino acids

Sequence
(BLAST)

001: MYGGDEVSAI VIDLGSHTCK AGYAGEDAPK AVFPSAVGSV DEMEVDNPDN PEDNSGSTPD LKSKGKRKLY VGSQALGFRR DHMEVISPIR DGTVVDWDIV
101: ENIWDHAFRE CLLIDPKEHP MLLAEPCSNT QQQREKAAEI MFEKYQVPAL FLAKNAVLTS FASGRATSLV VDSGGGLTTV APVHDGYVLQ KAVCTSPIGG
201: GILTDCLIKS LEQKGITIKP RYSFKRKEIR PGEFQTVDLD FPDTTESYKL YCQRAIASDI KECVSRAPDT PYDDSSYSNI PTTSYELPDG QTIEVGADRF
301: KIPDILFNPS LVQTIPGMES FAETAASLRG LPQMVIDSIN KCDVDIRREL FSSILLAGGT SSMQQLKERL EKDLLEESPQ AARVKVLASG NATERRFSVW
401: IGGSILASLG SFQQMWFSKS EYEEHGASYV QRKCP

Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P

Arabidopsis Description

ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.