Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
nucleus: 27291164 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66446 | Soybean | nucleus | 96.19 | 96.4 |
| Solyc12g037980.1.1 | Tomato | nucleus | 83.86 | 85.98 |
| PGSC0003DMT400056033 | Potato | cytosol | 83.86 | 85.98 |
| KRH41617 | Soybean | nucleus | 81.39 | 84.22 |
| CDY26159 | Canola | cytosol | 78.03 | 78.73 |
| CDY19213 | Canola | cytosol | 77.8 | 78.51 |
| CDX83847 | Canola | cytosol | 77.13 | 78.36 |
| CDX96721 | Canola | cytosol | 76.91 | 78.31 |
| AT1G18450.1 | Thale cress | cytosol | 77.13 | 78.0 |
| GSMUA_Achr8P16860_001 | Banana | endoplasmic reticulum | 79.6 | 75.05 |
| Os08t0137200-01 | Rice | nucleus | 73.09 | 73.59 |
| EER93001 | Sorghum | cytosol | 72.65 | 73.14 |
| TraesCS5D01G364800.1 | Wheat | cytosol | 72.42 | 72.91 |
| TraesCS5B01G358500.1 | Wheat | cytosol | 72.42 | 72.91 |
| Zm00001d027326_P001 | Maize | cytosol, extracellular, nucleus | 72.2 | 72.69 |
| TraesCS5A01G356000.1 | Wheat | cytosol, nucleus | 72.2 | 72.69 |
| TraesCS6B01G189000.1 | Wheat | cytosol | 70.85 | 71.33 |
| TraesCS6D01G149800.1 | Wheat | cytosol | 70.4 | 70.88 |
| TraesCS6A01G162300.2 | Wheat | cytosol | 70.18 | 70.65 |
| VIT_17s0000g04010.t01 | Wine grape | mitochondrion | 67.04 | 67.65 |
| HORVU6Hr1G032610.8 | Barley | cytosol | 71.08 | 65.9 |
| HORVU5Hr1G088030.1 | Barley | plastid | 71.97 | 63.19 |
| KRG93168 | Soybean | mitochondrion, nucleus | 36.32 | 42.97 |
| KRH38098 | Soybean | cytosol | 36.1 | 42.71 |
| KRH71847 | Soybean | endoplasmic reticulum, nucleus | 36.1 | 42.71 |
| KRH56507 | Soybean | endoplasmic reticulum, mitochondrion | 36.1 | 42.71 |
| KRH10268 | Soybean | mitochondrion, nucleus | 35.87 | 42.44 |
| KRH23061 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 35.87 | 42.44 |
| KRH29804 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 35.87 | 42.44 |
| KRH67068 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 35.87 | 42.44 |
| KRG95386 | Soybean | cytosol | 35.65 | 42.18 |
| KRH43389 | Soybean | cytosol | 35.65 | 42.18 |
| KRH01660 | Soybean | mitochondrion, nucleus | 35.65 | 42.18 |
| KRH59535 | Soybean | cytosol | 35.65 | 42.18 |
| KRH70465 | Soybean | mitochondrion, nucleus | 35.65 | 42.18 |
| KRH64098 | Soybean | cytosol | 35.43 | 41.91 |
| KRH53856 | Soybean | endoplasmic reticulum, mitochondrion | 30.94 | 41.57 |
| KRH10484 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 34.53 | 40.85 |
| KRH43946 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 34.53 | 40.85 |
| KRH24799 | Soybean | cytosol | 34.08 | 37.07 |
| KRH06905 | Soybean | cytosol | 27.58 | 31.62 |
| KRG94584 | Soybean | cytosol | 27.35 | 31.36 |
| KRH59228 | Soybean | nucleus | 28.25 | 29.44 |
| KRH23861 | Soybean | cytosol, nucleus | 22.42 | 27.7 |
| KRH13968 | Soybean | cytosol, nucleus | 22.2 | 27.42 |
| KRH59222 | Soybean | cytosol | 11.66 | 27.08 |
| KRH32953 | Soybean | cytosol | 21.75 | 26.87 |
| KRH39934 | Soybean | cytosol | 19.73 | 26.67 |
| KRH61849 | Soybean | cytosol, nucleus | 24.44 | 25.0 |
Protein Annotations
| EMBL:ACUP02004305 | EnsemblPlants:KRH48882 | EnsemblPlantsGene:GLYMA_07G118800 | EntrezGene:100795390 | InterPro:Actin | PANTHER:PTHR11937 |
| PANTHER:PTHR11937:SF274 | PFAM:PF00022 | ProteinID:KRH48882 | ProteinID:KRH48882.1 | SEG:seg | SMART:SM00268 |
| SUPFAM:SSF53067 | UniParc:UPI000233893D | UniProt:I1KJG0 | MapMan:12.4.6.1 | : | : |
Description
hypothetical protein
Coordinates
chr7:+:13518750..13538300
Molecular Weight (calculated)
49061.0 Da
IEP (calculated)
4.911
GRAVY (calculated)
-0.357
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGGDEVSAI VIDLGSHTCK AGYAGEDAPK AVFPSVVGAI DQMDVDEADN GEKNPGSAPE SNNNNVRNAD SDKAKGKRKL YVGSQSLGYR RDHMEVLSPF
101: KDGVVADWDI VDSIWDHAFR ECLLIDPKEH PMLLAEPSSN SQQQRERTVE HMFEKYKAPA LFLAKNAVLT SFASGRATSV VVDGGGGSTT VAPVHDGYVL
201: QKAVATSPIG GEFLTDCLMK SLESKGIMIK PRYSFRRKEI RPGEFQTVDL EFPNTTESYK LFSQRVIASD IKECVCRAPD TPYDESAYSN IPMTSYELPD
301: GQTVEIGADR FKIPDVLFNP SLVQSIPGME SFAEIAPSVR GLPQMVIESI NKCDVDIRRE LFNSILLAGG TASMQQLKER LEKDLLEESP QAARVKVLAS
401: GNATERRFSV WIGGSILASL GSFQQMWFSK SEYEEHGASY IQRKCP
101: KDGVVADWDI VDSIWDHAFR ECLLIDPKEH PMLLAEPSSN SQQQRERTVE HMFEKYKAPA LFLAKNAVLT SFASGRATSV VVDGGGGSTT VAPVHDGYVL
201: QKAVATSPIG GEFLTDCLMK SLESKGIMIK PRYSFRRKEI RPGEFQTVDL EFPNTTESYK LFSQRVIASD IKECVCRAPD TPYDESAYSN IPMTSYELPD
301: GQTVEIGADR FKIPDVLFNP SLVQSIPGME SFAEIAPSVR GLPQMVIESI NKCDVDIRRE LFNSILLAGG TASMQQLKER LEKDLLEESP QAARVKVLAS
401: GNATERRFSV WIGGSILASL GSFQQMWFSK SEYEEHGASY IQRKCP
001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
Arabidopsis Description
ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.