Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G358500.1 | Wheat | cytosol | 99.32 | 99.32 |
| TraesCS5D01G364800.1 | Wheat | cytosol | 99.1 | 99.1 |
| TraesCS6A01G162300.2 | Wheat | cytosol | 93.68 | 93.68 |
| Os08t0137200-01 | Rice | nucleus | 90.97 | 90.97 |
| Zm00001d027326_P001 | Maize | cytosol, extracellular, nucleus | 89.84 | 89.84 |
| EER93001 | Sorghum | cytosol | 89.84 | 89.84 |
| HORVU5Hr1G088030.1 | Barley | plastid | 98.42 | 85.83 |
| PGSC0003DMT400056033 | Potato | cytosol | 72.46 | 73.79 |
| Solyc12g037980.1.1 | Tomato | nucleus | 71.78 | 73.1 |
| KRH66446 | Soybean | nucleus | 73.14 | 72.81 |
| KRH48882 | Soybean | nucleus | 72.69 | 72.2 |
| GSMUA_Achr8P16860_001 | Banana | endoplasmic reticulum | 76.75 | 71.88 |
| KRH41617 | Soybean | nucleus | 69.53 | 71.46 |
| CDY26159 | Canola | cytosol | 68.85 | 69.0 |
| CDY19213 | Canola | cytosol | 68.62 | 68.78 |
| CDX96721 | Canola | cytosol | 67.95 | 68.72 |
| CDX83847 | Canola | cytosol | 67.72 | 68.34 |
| AT1G18450.1 | Thale cress | cytosol | 67.95 | 68.25 |
| VIT_17s0000g04010.t01 | Wine grape | mitochondrion | 58.24 | 58.37 |
| TraesCS3A01G377300.1 | Wheat | cytosol | 35.67 | 42.02 |
| TraesCS4A01G356100.2 | Wheat | cytosol | 35.89 | 41.95 |
| TraesCS5A01G000400.1 | Wheat | golgi | 35.21 | 41.38 |
| TraesCS1A01G274400.1 | Wheat | golgi | 34.99 | 41.22 |
| TraesCS5A01G124300.2 | Wheat | golgi | 36.12 | 39.12 |
| TraesCS1A01G020500.2 | Wheat | cytosol | 35.89 | 39.07 |
| TraesCS4A01G264400.3 | Wheat | cytosol, plastid | 32.28 | 36.48 |
| TraesCS1A01G179000.1 | Wheat | cytosol | 33.63 | 33.11 |
| TraesCS3A01G369400.1 | Wheat | cytosol | 27.54 | 30.5 |
| TraesCS5A01G420600.1 | Wheat | cytosol, nucleus | 21.9 | 26.8 |
| TraesCS6A01G211000.1 | Wheat | cytosol | 25.51 | 26.46 |
| TraesCS7A01G311700.1 | Wheat | cytosol | 25.28 | 25.69 |
| TraesCS2A01G585700.1 | Wheat | cytosol | 23.7 | 24.42 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G356000.1 | EnsemblPlantsGene:TraesCS5A01G356000 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Actin | PANTHER:PTHR11937 |
| PANTHER:PTHR11937:SF274 | PFAM:PF00022 | SEG:seg | SMART:SM00268 | SUPFAM:SSF53067 | TIGR:cd00012 |
| MapMan:12.4.6.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:558321783..558331180
Molecular Weight (calculated)
48962.9 Da
IEP (calculated)
4.992
GRAVY (calculated)
-0.360
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGGDEVSAI VIDVGSYSCK AGYAGDDTPK SVFPSVVGSI EQAEDTDEAK PEKEADSASD PKNGSKPMDV DKAKKNRKFY VGQELEFRRD HMEVISPMKD
101: GTVTDWDVVD NIWNHAFRRR LLINPEEHPM LIAEPSINSA QQREKAAELM FEKYKVPALF LAKNAVLTSF ASGRATSLVV DSGGGSTVVS AVHDGYVLQK
201: SVATSPIGGE FLTDCMMKSL ESKGVVIRPR YSFKKKEVSP GDYKVVDLDF PNTTDSYRLY HMRAIASDIK ETVCRVPDTP FDEVAYANVP TTSYELPDGQ
301: TIEVGAERFK IPDILFNPYL SQTIPGIDGF GDSTSIRGLP RMVLESVNRC DVDIRKELLS SILLSGGSSS ILQLKDRLEK EVLEESPQNA RVKVLASGNS
401: TERRFSVWIG GSILASLGSF QQMWFSKAEY EEHGVSYIQR KCP
101: GTVTDWDVVD NIWNHAFRRR LLINPEEHPM LIAEPSINSA QQREKAAELM FEKYKVPALF LAKNAVLTSF ASGRATSLVV DSGGGSTVVS AVHDGYVLQK
201: SVATSPIGGE FLTDCMMKSL ESKGVVIRPR YSFKKKEVSP GDYKVVDLDF PNTTDSYRLY HMRAIASDIK ETVCRVPDTP FDEVAYANVP TTSYELPDGQ
301: TIEVGAERFK IPDILFNPYL SQTIPGIDGF GDSTSIRGLP RMVLESVNRC DVDIRKELLS SILLSGGSSS ILQLKDRLEK EVLEESPQNA RVKVLASGNS
401: TERRFSVWIG GSILASLGSF QQMWFSKAEY EEHGVSYIQR KCP
001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
Arabidopsis Description
ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.