Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G516200.1 | Wheat | cytosol | 99.47 | 100.0 |
| TraesCS5B01G516100.1 | Wheat | cytosol | 99.47 | 100.0 |
| HORVU5Hr1G117900.1 | Barley | cytosol | 99.47 | 100.0 |
| AT5G09810.1 | Thale cress | cytosol | 98.15 | 98.67 |
| Os03t0836000-01 | Rice | plasma membrane, plastid | 98.15 | 98.67 |
| CDX69885 | Canola | cytosol | 98.15 | 98.67 |
| CDY21607 | Canola | cytosol | 98.15 | 98.67 |
| CDY30296 | Canola | cytosol | 91.82 | 98.58 |
| CDX85794 | Canola | cytosol | 91.82 | 98.58 |
| CDY40061 | Canola | cytosol | 91.82 | 98.58 |
| CDY31972 | Canola | cytosol | 91.82 | 98.58 |
| Bra028615.1-P | Field mustard | cytosol | 97.89 | 98.41 |
| GSMUA_Achr6P25350_001 | Banana | cytosol | 97.89 | 98.41 |
| Bra009081.1-P | Field mustard | cytosol | 91.56 | 98.3 |
| CDX81140 | Canola | cytosol | 97.63 | 98.14 |
| CDY56544 | Canola | cytosol | 97.63 | 98.14 |
| EER90564 | Sorghum | cytosol | 97.63 | 98.14 |
| GSMUA_Achr9P08850_001 | Banana | cytosol | 90.24 | 97.99 |
| VIT_12s0178g00200.t01 | Wine grape | cytosol | 97.36 | 97.88 |
| Bra006033.1-P | Field mustard | cytosol | 97.36 | 97.88 |
| GSMUA_Achr9P03170_001 | Banana | cytosol | 97.1 | 97.87 |
| KRH43389 | Soybean | cytosol | 97.1 | 97.61 |
| KRH59535 | Soybean | cytosol | 97.1 | 97.61 |
| KRH64098 | Soybean | cytosol | 97.1 | 97.61 |
| Solyc03g078400.2.1 | Tomato | nucleus, plastid | 97.1 | 97.61 |
| PGSC0003DMT400047481 | Potato | cytosol | 97.1 | 97.61 |
| KRH53856 | Soybean | endoplasmic reticulum, mitochondrion | 85.49 | 97.59 |
| GSMUA_Achr6P34320_001 | Banana | cytosol | 62.8 | 97.54 |
| GSMUA_Achr5P29190_001 | Banana | cytosol | 89.45 | 97.41 |
| GSMUA_Achr8P16150_001 | Banana | cytosol | 96.83 | 97.35 |
| GSMUA_Achr3P02960_001 | Banana | cytosol | 96.83 | 97.35 |
| PGSC0003DMT400010174 | Potato | cytosol | 96.57 | 97.08 |
| Solyc11g005330.1.1 | Tomato | nucleus | 96.57 | 97.08 |
| GSMUA_Achr8P02660_001 | Banana | cytosol | 96.57 | 97.08 |
| GSMUA_Achr2P16160_001 | Banana | cytosol | 96.57 | 97.08 |
| Solyc01g104770.2.1 | Tomato | nucleus | 96.31 | 96.82 |
| GSMUA_Achr10P... | Banana | cytosol | 96.31 | 96.82 |
| GSMUA_Achr7P10410_001 | Banana | cytosol | 96.04 | 96.55 |
| TraesCS5A01G000400.1 | Wheat | golgi | 95.78 | 96.29 |
| GSMUA_Achr11P... | Banana | cytosol | 88.65 | 96.28 |
| PGSC0003DMT400076499 | Potato | cytosol | 48.55 | 95.34 |
| GSMUA_Achr11P... | Banana | cytosol | 94.72 | 95.23 |
| KRH10484 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 94.2 | 94.69 |
| KRH43946 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 94.2 | 94.69 |
| Zm00001d034761_P002 | Maize | cytosol | 97.89 | 94.64 |
| TraesCS1A01G274400.1 | Wheat | golgi | 92.88 | 93.62 |
| TraesCS3A01G377300.1 | Wheat | cytosol | 91.56 | 92.29 |
| Solyc04g071260.2.1 | Tomato | plastid | 91.56 | 92.04 |
| AT1G49240.1 | Thale cress | cytosol | 91.29 | 91.78 |
| CDX82326 | Canola | cytosol | 91.29 | 91.78 |
| Bra022356.1-P | Field mustard | cytosol | 78.1 | 91.64 |
| CDX99315 | Canola | cytosol | 78.1 | 91.64 |
| CDX95498 | Canola | cytosol | 91.03 | 91.51 |
| CDX92272 | Canola | cytosol | 91.03 | 91.51 |
| CDY18545 | Canola | cytosol | 91.03 | 91.51 |
| CDY61982 | Canola | cytosol | 91.03 | 91.51 |
| AT3G18780.3 | Thale cress | cytosol | 91.03 | 91.51 |
| CDX92271 | Canola | cytosol | 75.99 | 90.85 |
| TraesCS1A01G020500.2 | Wheat | cytosol | 97.36 | 90.66 |
| TraesCS5A01G124300.2 | Wheat | golgi | 97.63 | 90.46 |
| PGSC0003DMT400076501 | Potato | cytosol | 47.23 | 89.5 |
| TraesCS4A01G264400.3 | Wheat | cytosol, plastid | 90.5 | 87.5 |
| GSMUA_Achr10P... | Banana | cytosol | 62.53 | 86.18 |
| Bra037560.1-P | Field mustard | cytoskeleton, cytosol | 77.84 | 83.57 |
| VIT_04s0044g00580.t01 | Wine grape | extracellular | 97.36 | 80.22 |
| TraesCS1A01G179000.1 | Wheat | cytosol | 92.88 | 78.22 |
| PGSC0003DMT400087294 | Potato | mitochondrion | 56.46 | 78.1 |
| PGSC0003DMT400022210 | Potato | cytosol | 68.34 | 70.38 |
| PGSC0003DMT400022205 | Potato | cytosol | 66.75 | 69.13 |
| PGSC0003DMT400074882 | Potato | cytosol | 67.28 | 68.92 |
| PGSC0003DMT400074887 | Potato | cytosol | 64.12 | 65.68 |
| PGSC0003DMT400088088 | Potato | cytosol | 32.45 | 63.4 |
| TraesCS3A01G369400.1 | Wheat | cytosol | 44.33 | 42.0 |
| TraesCS5A01G356000.1 | Wheat | cytosol, nucleus | 41.95 | 35.89 |
| TraesCS5A01G420600.1 | Wheat | cytosol, nucleus | 33.77 | 35.36 |
| TraesCS6A01G162300.2 | Wheat | cytosol | 40.9 | 34.99 |
| TraesCS6A01G211000.1 | Wheat | cytosol | 37.73 | 33.49 |
| TraesCS7A01G311700.1 | Wheat | cytosol | 37.73 | 32.8 |
| TraesCS2A01G585700.1 | Wheat | cytosol | 32.19 | 28.37 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G356100.2 | EnsemblPlantsGene:TraesCS4A01G356100 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Actin | InterPro:Actin/actin-like_CS |
| InterPro:Actin_CS | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF252 | PFAM:PF00022 | PRINTS:PR00190 | ScanProsite:PS00406 |
| ScanProsite:PS00432 | ScanProsite:PS01132 | SMART:SM00268 | SUPFAM:SSF53067 | TIGR:cd00012 | MapMan:20.2.1 |
Description
No Description!
Coordinates
chr4A:+:629858888..629860414
Molecular Weight (calculated)
41827.2 Da
IEP (calculated)
5.162
GRAVY (calculated)
-0.179
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGTCIVLDSG DGVSHTVPIY EGYALPHAIL RLDLAGRDLT DSLMKILTER
201: GYSFTTTAER EIVRDIKEKL AYVALDYEQE LETAKSSSSV EKSYELPDGQ VITIGAERFR CPEVLFQPSL IGMEAPGIHE TTYNSIMKCD VDIRKDLYGN
301: IVLSGGTTMF PGIADRMSKE ITALAPSSMK IKVVAPPERK YSVWIGGSIL ASLSTFQQMW ISKGEYDESG PSIVHRKCF
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGTCIVLDSG DGVSHTVPIY EGYALPHAIL RLDLAGRDLT DSLMKILTER
201: GYSFTTTAER EIVRDIKEKL AYVALDYEQE LETAKSSSSV EKSYELPDGQ VITIGAERFR CPEVLFQPSL IGMEAPGIHE TTYNSIMKCD VDIRKDLYGN
301: IVLSGGTTMF PGIADRMSKE ITALAPSSMK IKVVAPPERK YSVWIGGSIL ASLSTFQQMW ISKGEYDESG PSIVHRKCF
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF
Arabidopsis Description
ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.