Factsheet for GSMUA_Achr6P34320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09160_001
GSMUA_Achr2P08030_001
GSMUA_Achr2P16160_001
GSMUA_Achr3P02960_001
GSMUA_Achr3P20980_001
GSMUA_Achr3P26270_001
GSMUA_Achr5P29190_001
GSMUA_Achr6P25350_001
GSMUA_Achr6P34320_001
GSMUA_Achr7P10410_001
GSMUA_Achr7P18630_001
GSMUA_Achr7P24000_001
GSMUA_Achr8P02660_001
GSMUA_Achr8P05700_001
GSMUA_Achr8P16150_001
GSMUA_Achr9P03170_001
GSMUA_Achr9P08850_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	GSMUA_Achr3P26270_001	AT1G72770.1	19033529
AT1G49240.1	GSMUA_Achr7P24000_001	AT1G72770.1	19033529
AT1G49240.1	GSMUA_Achr8P05700_001	AT1G72770.1	19033529
AT5G09810.1	GSMUA_Achr1P09160_001	AT2G31200.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT2G37620.1	21798944
AT5G09810.1	GSMUA_Achr7P18630_001	AT2G37620.1	21798944
AT5G09810.1	GSMUA_AchrUn_...	AT2G37620.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT3G12110.1	21798944
AT5G09810.1	GSMUA_Achr7P18630_001	AT3G12110.1	21798944
AT5G09810.1	GSMUA_AchrUn_...	AT3G12110.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT3G18060.1	21798944
AT5G09810.1	GSMUA_Achr3P20980_001	AT3G18060.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr10P...	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr11P...	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr11P...	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr2P08030_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr2P16160_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr3P02960_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr5P29190_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr6P25350_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr6P34320_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr7P10410_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr8P02660_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr8P16150_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr9P03170_001	AT5G09810.1	21798944
AT5G09810.1	GSMUA_Achr9P08850_001	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076501	Potato	cytosol	72.13	88.0
Zm00001d008746_P001	Maize	cytosol	84.02	74.55
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	96.31	70.78
GSMUA_Achr3P20240_001	Banana	cytosol	84.84	69.0
GSMUA_Achr1P20200_001	Banana	cytosol	97.54	68.59
CDY40061	Canola	cytosol	96.72	66.86
CDY31972	Canola	cytosol	96.72	66.86
Bra009081.1-P	Field mustard	cytosol	96.72	66.86
CDY30296	Canola	cytosol	96.72	66.86
CDX85794	Canola	cytosol	96.72	66.86
GSMUA_Achr9P03170_001	Banana	cytosol	99.18	64.36
GSMUA_Achr8P02660_001	Banana	cytosol	99.18	64.19
GSMUA_Achr2P16160_001	Banana	cytosol	98.77	63.93
GSMUA_Achr10P...	Banana	cytosol	98.36	63.66
GSMUA_Achr11P...	Banana	cytosol	97.95	63.4
GSMUA_Achr8P16150_001	Banana	cytosol	97.95	63.4
VIT_12s0178g00200.t01	Wine grape	cytosol	97.95	63.4
GSMUA_Achr7P10410_001	Banana	cytosol	97.95	63.4
HORVU5Hr1G117900.1	Barley	cytosol	97.54	63.13
GSMUA_Achr3P02960_001	Banana	cytosol	97.54	63.13
GSMUA_Achr6P25350_001	Banana	cytosol	97.54	63.13
TraesCS5D01G516200.1	Wheat	cytosol	97.54	63.13
TraesCS5B01G516100.1	Wheat	cytosol	97.54	63.13
GSMUA_Achr1P05990_001	Banana	plasma membrane	97.13	62.86
TraesCS4A01G356100.2	Wheat	cytosol	97.54	62.8
GSMUA_Achr10P...	Banana	cytosol	84.43	62.61
CDY21607	Canola	cytosol	96.72	62.6
AT5G09810.1	Thale cress	cytosol	96.72	62.6
Bra006033.1-P	Field mustard	cytosol	96.72	62.6
CDX69885	Canola	cytosol	96.72	62.6
CDX81140	Canola	cytosol	96.72	62.6
CDY56544	Canola	cytosol	96.72	62.6
KRH64098	Soybean	cytosol	96.31	62.33
Os03t0836000-01	Rice	plasma membrane, plastid	96.31	62.33
KRH59535	Soybean	cytosol	96.31	62.33
KRH43389	Soybean	cytosol	96.31	62.33
Bra028615.1-P	Field mustard	cytosol	96.31	62.33
Solyc03g078400.2.1	Tomato	nucleus, plastid	95.9	62.07
PGSC0003DMT400047481	Potato	cytosol	95.9	62.07
EER90564	Sorghum	cytosol	95.9	62.07
GSMUA_AchrUn_...	Banana	plasma membrane	95.9	62.07
Solyc01g104770.2.1	Tomato	nucleus	95.49	61.8
GSMUA_Achr4P31250_001	Banana	cytosol	95.49	61.8
Solyc11g005330.1.1	Tomato	nucleus	95.08	61.54
PGSC0003DMT400010174	Potato	cytosol	95.08	61.54
Zm00001d012277_P001	Maize	cytosol	94.26	61.17
GSMUA_Achr5P29190_001	Banana	cytosol	86.89	60.92
EES01810	Sorghum	cytosol	93.85	60.9
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	93.44	60.64
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.44	60.48
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.44	60.48
GSMUA_Achr9P08850_001	Banana	cytosol	86.48	60.46
GSMUA_Achr11P...	Banana	cytosol	86.07	60.17
Zm00001d034761_P002	Maize	cytosol	95.9	59.69
GSMUA_Achr6P02480_001	Banana	cytosol	72.54	59.6
TraesCS1A01G274400.1	Wheat	golgi	91.8	59.57
TraesCS1B01G283900.1	Wheat	cytosol	91.8	59.57
HORVU1Hr1G074350.1	Barley	cytosol	91.8	59.57
TraesCS1D01G274400.1	Wheat	cytosol	91.8	59.57
Os05t0438800-01	Rice	plasma membrane, plastid	91.39	59.31
Solyc04g071260.2.1	Tomato	plastid	91.39	59.15
AT1G49240.1	Thale cress	cytosol	90.98	58.89
CDY18545	Canola	cytosol	90.98	58.89
CDY61982	Canola	cytosol	90.98	58.89
CDX95498	Canola	cytosol	90.98	58.89
CDX92272	Canola	cytosol	90.98	58.89
AT3G18780.3	Thale cress	cytosol	90.98	58.89
EES19603	Sorghum	cytosol	90.57	58.78
Zm00001d010159_P002	Maize	extracellular, plasma membrane	90.57	58.78
CDX82326	Canola	cytosol	90.57	58.62
GSMUA_Achr2P15150_001	Banana	cytosol	83.2	58.17
GSMUA_Achr10P...	Banana	cytosol	59.02	54.75
GSMUA_Achr10P...	Banana	cytosol	60.66	53.82
CDX99315	Canola	cytosol	70.9	53.56
Bra022356.1-P	Field mustard	cytosol	70.49	53.25
GSMUA_Achr2P08030_001	Banana	cytosol	76.23	53.14
CDX92271	Canola	cytosol	67.62	52.05
VIT_04s0044g00580.t01	Wine grape	extracellular	96.72	51.3
GSMUA_Achr7P18630_001	Banana	cytosol	67.21	51.25
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	70.49	48.73
Zm00001d007792_P001	Maize	cytosol	49.18	45.45
PGSC0003DMT400087294	Potato	mitochondrion	48.36	43.07
PGSC0003DMT400022210	Potato	cytosol	63.52	42.12
PGSC0003DMT400074882	Potato	cytosol	61.48	40.54
PGSC0003DMT400022205	Potato	cytosol	60.25	40.16
PGSC0003DMT400074887	Potato	cytosol	59.43	39.19
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	38.52	32.3
PGSC0003DMT400076499	Potato	cytosol	22.54	28.5
GSMUA_AchrUn_...	Banana	cytosol	44.67	28.02
GSMUA_Achr2P05960_001	Banana	cytosol	32.79	26.14
PGSC0003DMT400088088	Potato	cytosol	20.08	25.26
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	44.26	22.83
GSMUA_Achr9P07630_001	Banana	cytosol	36.89	21.03
GSMUA_Achr6P21120_001	Banana	cytosol	35.66	20.37
GSMUA_Achr8P01270_001	Banana	cytosol	34.84	19.91
GSMUA_AchrUn_...	Banana	cytosol	35.25	19.77
Zm00001d019396_P001	Maize	cytosol	11.89	17.26
Zm00001d016508_P001	Maize	cytosol	4.51	7.97
GSMUA_Achr2P05970_001	Banana	cytosol	3.28	4.52

Protein Annotations

EnsemblPlants:GSMUA_Achr6P34320_001	EnsemblPlants:GSMUA_Achr6T34320_001	EnsemblPlantsGene:GSMUA_Achr6G34320_001	Gene3D:3.30.420.40	Gene3D:3.30.420.520	Gene3D:3.90.640.10
InterPro:Actin	InterPro:Actin_CS	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252	PFAM:PF00022	PRINTS:PR00190
ScanProsite:PS00432	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00029500C3	UniProt:M0TCM5	MapMan:20.2.1

Description

Actin-2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G34320_001]

Coordinates

chr6:-:33001938..33003322

Molecular Weight (calculated)

26891.4 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.038

Length

244 amino acids

Sequence
(BLAST)

001: MYVAIQAVLS LYASGRTTGI VLDSGDGVSH TVPIYEGYAL PHAILRLDLA GRDLTDSLMK ILTERGYSFT TTAEREIVRD IKEKLAYVAL DYEQELETAK
101: TSSTVEKSYE LPDGQVITIG AERFRCPEVL FQPSLIGMEA AGIHETTYNS IMKCDVDIRK DLYGNIVLSG GSTMFPGIAD RMSKEITALA PSSMKIKVVA
201: PPERKYSVWI GGSILASLST FQQMWISKGE YEESGPAIVH RKCF

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.