Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016508_P001 | Maize | cytosol | 72.62 | 88.41 |
| Zm00001d019635_P001 | Maize | cytosol | 66.67 | 81.16 |
| Zm00001d016605_P001 | Maize | cytosol | 70.24 | 74.68 |
| PGSC0003DMT400076499 | Potato | cytosol | 80.95 | 70.47 |
| Zm00001d003298_P001 | Maize | cytosol | 81.55 | 52.09 |
| Zm00001d004087_P001 | Maize | cytosol | 57.74 | 44.91 |
| PGSC0003DMT400088088 | Potato | cytosol | 49.4 | 42.78 |
| CDX92271 | Canola | cytosol | 79.17 | 41.96 |
| CDX99315 | Canola | cytosol | 77.98 | 40.56 |
| Bra022356.1-P | Field mustard | cytosol | 77.38 | 40.25 |
| GSMUA_Achr5P29190_001 | Banana | cytosol | 82.74 | 39.94 |
| GSMUA_Achr9P08850_001 | Banana | cytosol | 82.74 | 39.83 |
| Zm00001d007792_P001 | Maize | cytosol | 61.9 | 39.39 |
| GSMUA_Achr11P... | Banana | cytosol | 81.55 | 39.26 |
| Zm00001d012277_P001 | Maize | cytosol | 84.52 | 37.77 |
| EES01810 | Sorghum | cytosol | 84.52 | 37.77 |
| Bra037560.1-P | Field mustard | cytoskeleton, cytosol | 79.17 | 37.68 |
| Zm00001d042731_P002 | Maize | extracellular, plasma membrane, plastid | 83.33 | 37.23 |
| GSMUA_Achr7P10410_001 | Banana | cytosol | 82.74 | 36.87 |
| GSMUA_Achr2P16160_001 | Banana | cytosol | 82.74 | 36.87 |
| GSMUA_Achr10P... | Banana | cytosol | 82.74 | 36.87 |
| GSMUA_Achr9P03170_001 | Banana | cytosol | 82.14 | 36.7 |
| Bra028615.1-P | Field mustard | cytosol | 82.14 | 36.6 |
| Zm00001d053177_P004 | Maize | cytosol | 82.14 | 36.6 |
| VIT_12s0178g00200.t01 | Wine grape | cytosol | 82.14 | 36.6 |
| AT5G09810.1 | Thale cress | cytosol | 82.14 | 36.6 |
| Solyc11g005330.1.1 | Tomato | nucleus | 82.14 | 36.6 |
| Solyc03g078400.2.1 | Tomato | nucleus, plastid | 82.14 | 36.6 |
| Zm00001d011086_P005 | Maize | cytosol | 82.14 | 36.6 |
| Zm00001d035720_P002 | Maize | cytosol | 82.14 | 36.6 |
| PGSC0003DMT400047481 | Potato | cytosol | 82.14 | 36.6 |
| Zm00001d013410_P001 | Maize | cytosol | 82.14 | 36.6 |
| PGSC0003DMT400010174 | Potato | cytosol | 82.14 | 36.6 |
| KRH64098 | Soybean | cytosol | 82.14 | 36.6 |
| KRH59535 | Soybean | cytosol | 82.14 | 36.6 |
| KRH43389 | Soybean | cytosol | 82.14 | 36.6 |
| CDX81140 | Canola | cytosol | 82.14 | 36.6 |
| CDY56544 | Canola | cytosol | 82.14 | 36.6 |
| GSMUA_Achr8P16150_001 | Banana | cytosol | 82.14 | 36.6 |
| CDX69885 | Canola | cytosol | 82.14 | 36.6 |
| GSMUA_Achr8P02660_001 | Banana | cytosol | 82.14 | 36.6 |
| Zm00001d033790_P001 | Maize | cytosol | 82.14 | 36.6 |
| CDY21607 | Canola | cytosol | 82.14 | 36.6 |
| GSMUA_Achr6P25350_001 | Banana | cytosol | 82.14 | 36.6 |
| CDY30296 | Canola | cytosol | 76.79 | 36.54 |
| CDY40061 | Canola | cytosol | 76.79 | 36.54 |
| CDY31972 | Canola | cytosol | 76.79 | 36.54 |
| CDX85794 | Canola | cytosol | 76.79 | 36.54 |
| GSMUA_Achr3P02960_001 | Banana | cytosol | 81.55 | 36.34 |
| Bra006033.1-P | Field mustard | cytosol | 81.55 | 36.34 |
| Zm00001d013873_P001 | Maize | plasma membrane, plastid | 81.55 | 36.34 |
| Zm00001d032480_P002 | Maize | plasma membrane, plastid | 81.55 | 36.34 |
| Bra009081.1-P | Field mustard | cytosol | 76.19 | 36.26 |
| Solyc01g104770.2.1 | Tomato | nucleus | 80.95 | 36.07 |
| GSMUA_Achr11P... | Banana | cytosol | 80.95 | 36.07 |
| KRH43946 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 80.95 | 36.07 |
| KRH10484 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 80.95 | 36.07 |
| Zm00001d035722_P007 | Maize | plasma membrane | 82.14 | 35.84 |
| Solyc04g071260.2.1 | Tomato | plastid | 79.76 | 35.54 |
| Zm00001d010159_P002 | Maize | extracellular, plasma membrane | 79.17 | 35.37 |
| AT3G18780.3 | Thale cress | cytosol | 79.17 | 35.28 |
| CDY61982 | Canola | cytosol | 79.17 | 35.28 |
| CDX82326 | Canola | cytosol | 79.17 | 35.28 |
| CDX92272 | Canola | cytosol | 79.17 | 35.28 |
| CDY18545 | Canola | cytosol | 79.17 | 35.28 |
| CDX95498 | Canola | cytosol | 79.17 | 35.28 |
| Zm00001d034761_P002 | Maize | cytosol | 82.14 | 35.2 |
| AT1G49240.1 | Thale cress | cytosol | 78.57 | 35.01 |
| GSMUA_Achr10P... | Banana | cytosol | 57.14 | 34.91 |
| PGSC0003DMT400087294 | Potato | mitochondrion | 55.95 | 34.31 |
| Zm00001d011087_P001 | Maize | plastid | 82.14 | 30.4 |
| PGSC0003DMT400022205 | Potato | cytosol | 65.48 | 30.05 |
| VIT_04s0044g00580.t01 | Wine grape | extracellular | 82.14 | 30.0 |
| PGSC0003DMT400022210 | Potato | cytosol | 65.48 | 29.89 |
| PGSC0003DMT400074882 | Potato | cytosol | 65.48 | 29.73 |
| KRH53856 | Soybean | endoplasmic reticulum, mitochondrion | 58.33 | 29.52 |
| PGSC0003DMT400074887 | Potato | cytosol | 60.12 | 27.3 |
| Zm00001d034421_P004 | Maize | plastid | 70.83 | 25.43 |
| Zm00001d004855_P002 | Maize | cytoskeleton, cytosol, nucleus | 82.14 | 23.39 |
| Zm00001d022558_P001 | Maize | cytosol | 48.21 | 20.82 |
| Zm00001d008652_P001 | Maize | endoplasmic reticulum, plastid | 28.57 | 20.78 |
| Zm00001d008746_P001 | Maize | cytosol | 25.6 | 15.64 |
| Zm00001d017106_P001 | Maize | cytosol | 39.88 | 15.47 |
| Zm00001d050981_P001 | Maize | cytosol | 39.29 | 14.38 |
| Zm00001d027326_P001 | Maize | cytosol, extracellular, nucleus | 36.31 | 13.77 |
| Zm00001d049629_P002 | Maize | nucleus | 27.38 | 12.5 |
| Zm00001d014112_P003 | Maize | cytosol | 30.36 | 12.35 |
| GSMUA_Achr6P34320_001 | Banana | cytosol | 17.26 | 11.89 |
| Zm00001d024059_P002 | Maize | cytosol | 27.98 | 10.93 |
| PGSC0003DMT400076501 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d019396_P001 | EnsemblPlants:Zm00001d019396_T001 | EnsemblPlantsGene:Zm00001d019396 | Gene3D:3.30.420.40 | InterPro:Actin | InterPro:Actin/actin-like_CS |
| PANTHER:PTHR11937 | PANTHER:PTHR11937:SF205 | PFAM:PF00022 | PRINTS:PR00190 | ProteinID:ONM52840.1 | ScanProsite:PS01132 |
| SMART:SM00268 | SUPFAM:SSF53067 | UniParc:UPI0008455BF6 | UniProt:A0A1R3QGB5 | UniProt:A0A1X8FXB2 | MapMan:35.1 |
Description
Actin-7
Coordinates
chr7:+:31777356..31778098
Molecular Weight (calculated)
18438.1 Da
IEP (calculated)
4.598
GRAVY (calculated)
-0.156
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEDVQPLV CDNGTGMIKA GFAGDDAPRA AFPSIVGRPR HTGVMSKRGI LTLKYLIEHG IVDNWDDMEK IWHHTFYNEL RVAPEEHPIL LTEAPLNPKA
101: NREKMTQIMF ETFNCPAMYV AIQVVLSLYA SGRTTGIVLD SGDNVDLVDP RESVTGSGEP GLPEAAVM
101: NREKMTQIMF ETFNCPAMYV AIQVVLSLYA SGRTTGIVLD SGDNVDLVDP RESVTGSGEP GLPEAAVM
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.