Factsheet for Zm00001d013410_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37705	Sorghum	cytosol	100.0	100.0
Zm00001d033790_P001	Maize	cytosol	100.0	100.0
Os03t0718100-01	Rice	plasma membrane	99.73	99.73
Zm00001d019635_P001	Maize	cytosol	35.54	97.1
Zm00001d053177_P004	Maize	cytosol	97.08	97.08
Zm00001d035720_P002	Maize	cytosol	96.29	96.29
Zm00001d011086_P005	Maize	cytosol	96.29	96.29
Zm00001d032480_P002	Maize	plasma membrane, plastid	96.02	96.02
Zm00001d013873_P001	Maize	plasma membrane, plastid	96.02	96.02
Zm00001d035722_P007	Maize	plasma membrane	96.29	94.29
Zm00001d012277_P001	Maize	cytosol	93.9	94.15
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	92.57	92.82
Zm00001d034761_P002	Maize	cytosol	95.49	91.84
Zm00001d016605_P001	Maize	cytosol	38.46	91.77
HORVU4Hr1G008310.9	Barley	cytosol	98.67	91.4
Zm00001d010159_P002	Maize	extracellular, plasma membrane	90.19	90.43
TraesCS4D01G050800.2	Wheat	cytosol	93.37	90.26
TraesCS4B01G050600.1	Wheat	cytosol	93.37	89.8
TraesCS4A01G264400.3	Wheat	cytosol, plastid	93.1	89.54
Zm00001d016508_P001	Maize	cytosol	31.57	86.23
Zm00001d008746_P001	Maize	cytosol	61.54	84.36
Zm00001d019396_P001	Maize	cytosol	36.6	82.14
Zm00001d011087_P001	Maize	plastid	96.29	79.96
Zm00001d007792_P001	Maize	cytosol	55.17	78.79
Zm00001d003298_P001	Maize	cytosol	53.85	77.19
Zm00001d004087_P001	Maize	cytosol	41.64	72.69
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	96.02	61.36
Zm00001d022558_P001	Maize	cytosol	45.89	44.47
Zm00001d034421_P004	Maize	plastid	46.68	37.61
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	41.11	34.99
Zm00001d017106_P001	Maize	cytosol	38.73	33.72
Zm00001d049629_P002	Maize	nucleus	31.57	32.34
Zm00001d050981_P001	Maize	cytosol	38.2	31.37
Zm00001d014112_P003	Maize	cytosol	33.95	30.99
Zm00001d024059_P002	Maize	cytosol	33.16	29.07
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	16.71	27.27

Protein Annotations

EntrezGene:100284092	EntrezGene:103625937	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	ProteinID:AQK63400.1
ProteinID:AQK63401.1	ProteinID:AQK63402.1	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	UniProt:B6TQ08
EMBL:EU967073	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	ProteinID:ONM08623.1
ProteinID:ONM08624.1	ProteinID:ONM08625.1	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432
ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF364	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0000E64968
EnsemblPlantsGene:Zm00001d013410	EnsemblPlants:Zm00001d013410_P001	EnsemblPlants:Zm00001d013410_T001	:	:	:

Description

Actin-1

Coordinates

chr5:-:10551528..10554020

Molecular Weight (calculated)

41799.2 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.178

Length

377 amino acids

Sequence
(BLAST)

001: MADAEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTTAEREI VRDMKEKLAY IALDYDQEME TAKTSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSFIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.