Factsheet for Zm00001d017106_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008906_P003
Zm00001d022558_P001
Zm00001d025835_P001
Zm00001d025836_P001
Zm00001d032131_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	Zm00001d008906_P003	AT1G29170.1	17267444
AT1G13180.1	Zm00001d025835_P001	AT1G29170.1	17267444
AT1G13180.1	Zm00001d025836_P001	AT1G29170.1	17267444
AT1G13180.1	Zm00001d032131_P001	AT1G29170.1	17267444
AT1G13180.1	Zm00001d022558_P001	AT3G27000.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0596900-01	Rice	cytosol	90.53	91.59
TraesCS6D01G194100.1	Wheat	cytosol	89.61	90.87
TraesCS6B01G240500.1	Wheat	cytosol	89.61	90.87
TraesCS6A01G211000.1	Wheat	cytosol	89.61	90.87
Zm00001d050981_P001	Maize	cytosol	96.3	90.85
HORVU6Hr1G053910.4	Barley	cytosol	87.3	85.52
VIT_01s0137g00280.t01	Wine grape	cytosol	84.3	85.28
GSMUA_Achr6P21120_001	Banana	cytosol	84.06	85.25
PGSC0003DMT400027956	Potato	cytosol	81.99	82.37
Solyc05g013940.2.1	Tomato	cytosol	81.52	82.28
KRH59228	Soybean	nucleus	81.06	82.01
Solyc04g024530.2.1	Tomato	cytosol	81.06	81.82
AT1G13180.1	Thale cress	cytosol	79.68	80.8
CDY34585	Canola	cytosol	77.83	78.92
CDY19392	Canola	cytosol	77.83	78.92
CDX98005	Canola	cytosol	77.83	78.92
Bra019815.1-P	Field mustard	cytosol	77.83	78.92
Bra016738.1-P	Field mustard	cytosol	77.6	78.69
CDY21087	Canola	cytosol	77.37	78.45
KRH59222	Soybean	cytosol	33.49	75.52
Zm00001d049629_P002	Maize	nucleus	58.89	69.29
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	36.26	67.97
Zm00001d019635_P001	Maize	cytosol	13.63	42.75
Zm00001d016508_P001	Maize	cytosol	13.39	42.03
Zm00001d016605_P001	Maize	cytosol	15.01	41.14
Zm00001d019396_P001	Maize	cytosol	15.47	39.88
Zm00001d053177_P004	Maize	cytosol	33.95	38.99
Zm00001d035720_P002	Maize	cytosol	33.95	38.99
Zm00001d032480_P002	Maize	plasma membrane, plastid	33.95	38.99
Zm00001d013873_P001	Maize	plasma membrane, plastid	33.95	38.99
Zm00001d011086_P005	Maize	cytosol	33.95	38.99
Zm00001d013410_P001	Maize	cytosol	33.72	38.73
Zm00001d033790_P001	Maize	cytosol	33.72	38.73
Zm00001d012277_P001	Maize	cytosol	33.26	38.3
Zm00001d035722_P007	Maize	plasma membrane	33.95	38.18
Zm00001d010159_P002	Maize	extracellular, plasma membrane	33.03	38.03
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	33.03	38.03
Zm00001d034761_P002	Maize	cytosol	33.26	36.73
Zm00001d003298_P001	Maize	cytosol	21.02	34.6
Zm00001d022558_P001	Maize	cytosol	30.95	34.45
Zm00001d004087_P001	Maize	cytosol	17.09	34.26
Zm00001d007792_P001	Maize	cytosol	20.79	34.09
Zm00001d011087_P001	Maize	plastid	33.95	32.38
Zm00001d008746_P001	Maize	cytosol	20.09	31.64
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	26.33	25.73
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	33.95	24.92
Zm00001d024059_P002	Maize	cytosol	24.71	24.88
Zm00001d014112_P003	Maize	cytosol	21.71	22.76
Zm00001d034421_P004	Maize	plastid	18.94	17.52

Protein Annotations

EntrezGene:100281189	MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	ProteinID:AQK72325.1	InterPro:Actin
InterPro:Arp3	UniProt:B4G056	EMBL:BT042744	EMBL:BT064674	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034314
PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00017B7A49
EnsemblPlantsGene:Zm00001d017106	EnsemblPlants:Zm00001d017106_P001	EnsemblPlants:Zm00001d017106_T001	SEG:seg	:	:

Description

Actin-related protein 3

Coordinates

chr5:+:185544849..185554401

Molecular Weight (calculated)

48350.3 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.275

Length

433 amino acids

Sequence
(BLAST)

001: MDALSRPAVV IDNGTGYTKM GFAGNVEPCF ITPTVVAVND SFSGSAQPAV RGTPARGNWL AQHSAGVMAD LDFYIGDEAL ARSRASSSHS LSYPIRNGQV
101: ENWDTMERFW QQCIFNYLRC DPEDHYFLLT ESPLTAPETR EYTGEIMFET FNVPGLYIAV QPVLALAAGY TTTKCEMTGV VVDVGDGATH IVPVADGYVI
201: GSSIRSIPIT GKDVTQFIHQ LLKERGENIP AEESFDVARR IKEMYCYTSS DIVKEFNKHD KEPSKYIKHW TGTKPKTGAK YTCDIGYERF LGPEIFFNPE
301: IYNNDFTTPL QVVIDKCIQS SPIDTRRALY KNIVLSGGST MFKDFHRRLQ RDLKKIVDAR VRASNSRLIS GDAKAQPIEV NVVSHPIQRY AVWFGGSVLA
401: STAEFYEACH TKAEYEEYGA SICRTNPVFK GMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.