Factsheet for Zm00001d032131_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, extracellular, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007384_P003
Zm00001d007806_P003
Zm00001d008652_P001
Zm00001d012342_P001
Zm00001d017106_P001
Zm00001d024153_P001
Zm00001d029004_P004
Zm00001d035534_P003
Zm00001d035539_P001
Zm00001d038664_P001
Zm00001d042645_P001
Zm00001d046856_P002
Zm00001d047540_P001
Zm00001d049629_P002
Zm00001d050981_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29170.1	Zm00001d008652_P001	AT1G13180.1	17267444
AT1G29170.1	Zm00001d017106_P001	AT1G13180.1	17267444
AT1G29170.1	Zm00001d049629_P002	AT1G13180.1	17267444
AT1G29170.1	Zm00001d050981_P001	AT1G13180.1	17267444
AT1G29170.1	Zm00001d007806_P003	AT1G30825.1	17267444
AT1G29170.1	Zm00001d007384_P003	AT4G16340.1	17267444
AT1G29170.1	Zm00001d012342_P001	AT4G16340.1	17267444
AT1G29170.1	Zm00001d024153_P001	AT4G16340.1	17267444
AT1G29170.1	Zm00001d029004_P004	AT4G16340.1	17267444
AT1G29170.1	Zm00001d035534_P003	AT4G16340.1	17267444
AT1G29170.1	Zm00001d035539_P001	AT4G16340.1	17267444
AT1G29170.1	Zm00001d038664_P001	AT4G16340.1	17267444
AT1G29170.1	Zm00001d042645_P001	AT4G16340.1	17267444
AT1G29170.1	Zm00001d046856_P002	AT4G16340.1	17267444
AT1G29170.1	Zm00001d047540_P001	AT4G16340.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025836_P001	Maize	cytosol	54.17	62.4
Zm00001d025835_P001	Maize	cytosol	54.17	62.4
CDX78876	Canola	nucleus	31.25	6.2
Zm00001d027498_P001	Maize	mitochondrion	11.11	5.84
VIT_10s0003g01270.t01	Wine grape	cytosol	36.81	5.64
CDY17225	Canola	nucleus	31.25	5.55
AT2G34150.2	Thale cress	nucleus	30.56	5.36
Bra005450.1-P	Field mustard	nucleus	31.94	5.18
CDY63143	Canola	nucleus	31.25	5.07
Zm00001d008906_P003	Maize	cytosol	47.22	4.87
CDY43322	Canola	nucleus	27.08	4.09
Bra010847.1-P	Field mustard	nucleus	27.08	4.06
CDX90172	Canola	nucleus	27.08	4.06
Solyc02g076840.2.1	Tomato	nucleus	36.11	4.0
Zm00001d028803_P002	Maize	nucleus	32.64	3.94
KRH42863	Soybean	nucleus	36.11	3.9
AT1G29170.1	Thale cress	nucleus	26.39	3.73
Zm00001d022570_P001	Maize	cytosol	15.97	3.57
VIT_08s0058g00770.t01	Wine grape	cytosol	3.47	3.52
Zm00001d047701_P002	Maize	nucleus	31.25	3.49
Zm00001d013353_P001	Maize	nucleus	8.33	2.92
CDX99451	Canola	nucleus	32.64	2.47
KRH58965	Soybean	nucleus	15.28	2.22
AT4G18600.1	Thale cress	nucleus	30.56	2.17
CDX78875	Canola	extracellular, vacuole	11.81	2.08
Bra013329.1-P	Field mustard	nucleus	31.25	1.96
Zm00001d034616_P001	Maize	cytosol	29.17	1.96

Protein Annotations

EMBL:EU964866	EnsemblPlants:Zm00001d032131_P001	EnsemblPlants:Zm00001d032131_T001	EnsemblPlantsGene:Zm00001d032131	EntrezGene:100216782	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0030036	InterPro:SCAR/WAVE_fam	PANTHER:PTHR12902	PANTHER:PTHR12902:SF12	ProteinID:ONM04438.1	SEG:seg
UniParc:UPI000182DF08	UniProt:B6TIQ1	MapMan:20.2.2.2.4	:	:	:

Description

Scar-like domain-containing protein WAVE 5

Coordinates

chr1:+:213971572..213974101

Molecular Weight (calculated)

15681.8 Da

IEP (calculated)

4.317

GRAVY (calculated)

0.060

Length

144 amino acids

Sequence
(BLAST)

001: MPLVRFEVRN EVGLGDPGLY GGGASAAAGE EEEPNALLEG VAVAGLVGIL RQLGDLAERG RFISKQEATM ESGFPLYLME SGFGASLFSC DFGIPAPFPF
101: MEGMRCCWSA HWNGTDIDRT FRFISKELRL TDLWISLDAL TKVN

Best Arabidopsis Sequence Match ( AT2G38440.1 )
(BLAST)

0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS

Arabidopsis Description

SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.