Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90172 | Canola | nucleus | 69.25 | 68.75 |
| AT1G29170.1 | Thale cress | nucleus | 49.0 | 45.78 |
| CDY17225 | Canola | nucleus | 32.95 | 38.72 |
| CDY63143 | Canola | nucleus | 28.44 | 30.52 |
| Zm00001d025836_P001 | Maize | cytosol | 3.88 | 29.6 |
| Zm00001d025835_P001 | Maize | cytosol | 3.88 | 29.6 |
| Zm00001d032131_P001 | Maize | cytosol, extracellular, plastid | 4.09 | 27.08 |
| CDX78876 | Canola | nucleus | 18.26 | 23.97 |
| KRH42863 | Soybean | nucleus | 31.79 | 22.7 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.44 | 22.05 |
| GSMUA_Achr10P... | Banana | cytosol | 25.92 | 20.79 |
| Solyc02g076840.2.1 | Tomato | nucleus | 28.33 | 20.75 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 28.02 | 20.63 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 23.5 | 20.55 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 27.28 | 20.25 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 27.07 | 20.11 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 27.07 | 20.11 |
| Os01t0208600-01 | Rice | cytosol | 27.39 | 19.57 |
| KXG31590 | Sorghum | cytosol | 28.02 | 19.46 |
| Zm00001d008906_P003 | Maize | cytosol | 25.6 | 17.49 |
| CDX78875 | Canola | extracellular, vacuole | 11.65 | 13.55 |
| CDY39815 | Canola | nucleus | 14.06 | 13.47 |
| CDY69042 | Canola | nucleus | 16.58 | 13.26 |
| CDX91460 | Canola | cytosol | 17.52 | 11.95 |
| CDX99451 | Canola | nucleus | 21.62 | 10.81 |
Protein Annotations
| EnsemblPlants:CDY43322 | EnsemblPlantsGene:GSBRNA2T00076371001 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:A0A078HZK7 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030036 | InterPro:SCAR/WAVE_fam | ncoils:Coil | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 | ProteinID:CDY43322 |
| ProteinID:CDY43322.1 | SEG:seg | UniParc:UPI0004EF3A9B | UniProt:A0A078HZK7 | MapMan:20.2.2.2.4 | : |
Description
BnaC03g58940DBnaC03g58940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZK7]
Coordinates
chrLK032552:-:91378..95871
Molecular Weight (calculated)
105191.0 Da
IEP (calculated)
4.460
GRAVY (calculated)
-0.740
Length
953 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSRLGVRN VYGTSQQAEF YGNVDREDPE AILNGVAVSG LIGVLRQLGD LAESAAEIFQ GIQEEVMATA SRSNQLKMRF QHIEATVPPL EKAVLAQTTH
101: LHFAYTGGVE WHPRIPHEHN HFIHDDLPNS FMDHYEECRD PPRLHMLDKF DINGPGSCLK RYSDPTYFRR ASSSLVKGNN KFQNNNMSCK IKKKKSSSRS
201: RDMSRLASMA NQNARKTFTL ISFSGQTSSS ISASTSDMEK RSDLQDHHSH TYDCLSTATS SLKTGEKTKG GLVSSSLTPG SCTIGSVLSE CETEDEHDNL
301: QFTPLQGQAA AGSSCVSWDE KEEIVEEPLG VKTDEASVVD ALVEKASYGE GTGRVDIENA ESEPGLQQSN GIDEVREIKA GTEIVREPRD SSEHETESEG
401: ECFVDALNSI ESESENEQGL KTRLEAVSIP CGVTGERLEK SSNKVEESCR SMDNDYLNAA DEMNHQDPLE SDNRSRSPRN DVCTTSNITS GEDKIGFTVV
501: PAPENSLSDS SNPLCHSEHQ KSEAKVSGEV EAIKIWTNGG LLGLNPSKPP VLEVPSPDCK TEERTLGSEE AEKDKSDDLV EHVLDTPSLA TQNLTVDQRE
601: CHETSSYGVF GGLSQKLFTN SFRRRDSLPH DNRQALPPTI PENDEVMAEK SRFLFRDEAP IDWFASSPPL QHMKISLNPV DNTLQASRLK LKFSDEDNNS
701: NNTFPSFQLL PEAATSLLDS CSDDDDDAFC MTSDIDYLSD YHSLSDSEQW EEPNERKEHD SFHESTHVDN NGEPSSLDTE AENGCVDLNF SYLQSPVEPL
801: PPPFPPVQWM VSKTASETIS ENKTTQSIQL QDALRFAFEK HTSSSIVNKE EPNTVASAPK PETKVHVKNN ASEEKQNANE KETDADDFLQ QIRTQHVNLK
901: PVVMTRTLSS TAAAATTDPA INIKISAMLE KANSIRQAVA SNDGDESDTW SDT
101: LHFAYTGGVE WHPRIPHEHN HFIHDDLPNS FMDHYEECRD PPRLHMLDKF DINGPGSCLK RYSDPTYFRR ASSSLVKGNN KFQNNNMSCK IKKKKSSSRS
201: RDMSRLASMA NQNARKTFTL ISFSGQTSSS ISASTSDMEK RSDLQDHHSH TYDCLSTATS SLKTGEKTKG GLVSSSLTPG SCTIGSVLSE CETEDEHDNL
301: QFTPLQGQAA AGSSCVSWDE KEEIVEEPLG VKTDEASVVD ALVEKASYGE GTGRVDIENA ESEPGLQQSN GIDEVREIKA GTEIVREPRD SSEHETESEG
401: ECFVDALNSI ESESENEQGL KTRLEAVSIP CGVTGERLEK SSNKVEESCR SMDNDYLNAA DEMNHQDPLE SDNRSRSPRN DVCTTSNITS GEDKIGFTVV
501: PAPENSLSDS SNPLCHSEHQ KSEAKVSGEV EAIKIWTNGG LLGLNPSKPP VLEVPSPDCK TEERTLGSEE AEKDKSDDLV EHVLDTPSLA TQNLTVDQRE
601: CHETSSYGVF GGLSQKLFTN SFRRRDSLPH DNRQALPPTI PENDEVMAEK SRFLFRDEAP IDWFASSPPL QHMKISLNPV DNTLQASRLK LKFSDEDNNS
701: NNTFPSFQLL PEAATSLLDS CSDDDDDAFC MTSDIDYLSD YHSLSDSEQW EEPNERKEHD SFHESTHVDN NGEPSSLDTE AENGCVDLNF SYLQSPVEPL
801: PPPFPPVQWM VSKTASETIS ENKTTQSIQL QDALRFAFEK HTSSSIVNKE EPNTVASAPK PETKVHVKNN ASEEKQNANE KETDADDFLQ QIRTQHVNLK
901: PVVMTRTLSS TAAAATTDPA INIKISAMLE KANSIRQAVA SNDGDESDTW SDT
0001: MPRNVYGMNQ SEVYRNVDRE DPKAILNGVA VTGLVGVLRQ LGDLAEFAAE IFHGIQEEVM ATASRSNQLK IRLQHIEATV PPLEKAMLAQ TTHIHFAYTG
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT
Arabidopsis Description
SCAR3Protein SCAR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP46]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.