Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0654300-01 | |
| Os02t0596900-01 | |
| Os02t0829900-01 | |
| Os03t0328000-01 | |
| Os08t0128300-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G168100.1 | Wheat | cytosol | 64.17 | 66.67 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 63.12 | 65.63 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 63.04 | 65.55 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 62.67 | 64.61 |
| KXG31590 | Sorghum | cytosol | 58.1 | 56.49 |
| Zm00001d008906_P003 | Maize | cytosol | 53.37 | 51.04 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.31 | 34.21 |
| VIT_10s0003g01270.t01 | Wine grape | cytosol | 23.99 | 34.08 |
| GSMUA_Achr10P... | Banana | cytosol | 29.46 | 33.08 |
| AT2G34150.2 | Thale cress | nucleus | 19.34 | 31.43 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 25.49 | 31.19 |
| CDY17225 | Canola | nucleus | 18.67 | 30.7 |
| CDY43322 | Canola | nucleus | 19.57 | 27.39 |
| Bra005450.1-P | Field mustard | nucleus | 18.07 | 27.14 |
| CDX90172 | Canola | nucleus | 19.42 | 26.98 |
| Bra010847.1-P | Field mustard | nucleus | 19.42 | 26.98 |
| AT1G29170.1 | Thale cress | nucleus | 20.09 | 26.27 |
| CDY63143 | Canola | nucleus | 17.17 | 25.79 |
| KRH42863 | Soybean | nucleus | 25.26 | 25.24 |
| Solyc02g076840.2.1 | Tomato | nucleus | 23.24 | 23.83 |
| CDX78876 | Canola | nucleus | 12.14 | 22.31 |
| KRH58965 | Soybean | nucleus | 15.74 | 21.21 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 1.95 | 18.31 |
| Os03t0298700-01 | Rice | cytosol | 16.34 | 16.73 |
| Os03t0817000-01 | Rice | cytosol | 5.25 | 15.8 |
| CDX78875 | Canola | extracellular, vacuole | 9.67 | 15.75 |
| Os07t0691700-01 | Rice | nucleus | 9.97 | 15.7 |
| Os03t0816900-01 | Rice | golgi | 13.34 | 15.41 |
| CDX99451 | Canola | nucleus | 16.19 | 11.33 |
| AT4G18600.1 | Thale cress | nucleus | 15.97 | 10.5 |
| Bra013329.1-P | Field mustard | nucleus | 16.19 | 9.43 |
| Os03t0298800-01 | Rice | nucleus | 0.97 | 5.6 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | EntrezGene:9268854 | EMBL:AK067713 | EMBL:AK104676 |
| EMBL:AK120865 | ProteinID:BAD73100.1 | ProteinID:BAH90957.1 | ProteinID:BAS70961.1 | ProteinID:BAS70962.1 | GO:GO:0003674 |
| GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 |
| InterPro:IPR003124 | EnsemblPlantsGene:Os01g0208600 | EnsemblPlants:Os01t0208600-01 | PFscan:PS51082 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 |
| UniProt:Q5QNA6 | InterPro:SCAR/WAVE_fam | UniParc:UPI000048DE7C | InterPro:WH2_dom | RefSeq:XP_015649279.1 | SEG:seg |
Description
EARLY SENESCENCE 1SCAR-like protein 2, Component of the suppressor of cAMP receptor/Wiskott-Aldrich syndrome protein family verprolin-homologous (SCAR/WAVE) complex, Actin organization, Panicle development, Regulation of water loss (Os01t0208600-01);Actin-binding WH2 domain containing protein. (Os01t0208600-02);Actin-binding WH2 domain containing protein. (Os01t0208600-03)
Coordinates
chr1:+:5890605..5898131
Molecular Weight (calculated)
144366.0 Da
IEP (calculated)
4.482
GRAVY (calculated)
-0.706
Length
1334 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLVRFEVRN EVGLGDPDLY GGGGGGGGGG GGGGVGAAAK KGGEAEPKAL LEGVAVAGLV GILRQLGDLA EFAADVFHDL HEQVITTSAR GRKVLTRVQN
0101: IEAALPSLEK AVKNQKSHIH FTYVPGSDWH AQLKDEQNHL LSSDLPRFMM DSYEECRDPP RLYLLDKFDN AGAGACSRRH SDPSYFKKAW DMMRADKTGN
0201: FQREKKSQKI KRKGSRLREP YHGQTTPRQR NGELQRALTA VQLTSRHFAT PSTDGRSLSE NRSTSDVRSN PDNISRSSSF SSKARLSFTE QVLDTKPTVV
0301: PHENGHDKLS NNNLHKLSNT PLHTRLNGTS ADDLGDDLKQ SSLLDDMTAR SPSVKWDEKA EITMSTTSVY CDDVVMDKAE HVQSKCISPE QQEIDHREME
0401: TLEQQEALHQ KAKQLLVSSG LNHHDEVPSE TDNYVDALNT LESETETEPE LQTKSRVKPV PSLNVDVPQV ELIDNIVTES PDSSVAEFPD AYQNSSMPPA
0501: PESAADFPSL SSADAPDISE PVLSGYTANP HPEVSAIATN TPVSNTEDAP GPLEISESAS RAYIITLPNQ SLPDSKEIPD SKAEDAPIDS PEKLEPGPSS
0601: YTPTIPIKES SIVSQNTNAE NVSGDCSEGT ACAISYSQHI ISDKPTNEVS ATNSSPDDTS SDEDTVESGG IVEVSNSQPM PLNDSLENGC ATQGLPANAP
0701: TNSTGVSSVK LWTNAGLFGL EPSKPPVFGA HDGPKEDTTP GHTQPQLCHS TGCPEVHFSK PTESAQVYVP NGNSPITSSF VGKLVGICPG STSHSSETNQ
0801: STVRTPDTVI GQTEGSTGCS TSFEHSDHKN IIGKQTSISE LLESEDSAEN GAEMFSKTDM TGRNNMNQVS ASSFSSIAQR FLANTLQRRT PKYTDLPMSS
0901: VIVNTDANGT DESTQISSLA PNETTFEASQ FEKKTENDTN GLPKSSLFSS SHYSEKSSPP LEYMKISFHP MSAFEMSKLD LDFSDENLHE NADDMMLPTF
1001: QLLPGSSVPQ LGSGSESEDD TFGRSYSYSS YDDLSPRLYS NSELWDQEDA NGLEDHDMHN NPNQIGSFGA PISSFVEFEQ MDLSGAKSTV SLTDLGDDNG
1101: LGTLDSHPAG ELPNFDTLMA HQNEAFIPHN PVSLSPDEGQ LPPPPPLPPM QWRTMRQVAS VEEGRGSAAK EDMLESTSDL PPVHTPVQEE HLLPIAPPDQ
1201: QNLLPIAPPD QQGHAKENDR KVDGVKEISN PLDIEIRASL LQQIRDKSGQ QKLNGHEKSK AVGNDTKNLD EREELLQQIR SKTFNLRRTN ASKTNTSSPT
1301: TANSSVVAIL EKANAIRQAV ASDEGGDDDS WSDI
0101: IEAALPSLEK AVKNQKSHIH FTYVPGSDWH AQLKDEQNHL LSSDLPRFMM DSYEECRDPP RLYLLDKFDN AGAGACSRRH SDPSYFKKAW DMMRADKTGN
0201: FQREKKSQKI KRKGSRLREP YHGQTTPRQR NGELQRALTA VQLTSRHFAT PSTDGRSLSE NRSTSDVRSN PDNISRSSSF SSKARLSFTE QVLDTKPTVV
0301: PHENGHDKLS NNNLHKLSNT PLHTRLNGTS ADDLGDDLKQ SSLLDDMTAR SPSVKWDEKA EITMSTTSVY CDDVVMDKAE HVQSKCISPE QQEIDHREME
0401: TLEQQEALHQ KAKQLLVSSG LNHHDEVPSE TDNYVDALNT LESETETEPE LQTKSRVKPV PSLNVDVPQV ELIDNIVTES PDSSVAEFPD AYQNSSMPPA
0501: PESAADFPSL SSADAPDISE PVLSGYTANP HPEVSAIATN TPVSNTEDAP GPLEISESAS RAYIITLPNQ SLPDSKEIPD SKAEDAPIDS PEKLEPGPSS
0601: YTPTIPIKES SIVSQNTNAE NVSGDCSEGT ACAISYSQHI ISDKPTNEVS ATNSSPDDTS SDEDTVESGG IVEVSNSQPM PLNDSLENGC ATQGLPANAP
0701: TNSTGVSSVK LWTNAGLFGL EPSKPPVFGA HDGPKEDTTP GHTQPQLCHS TGCPEVHFSK PTESAQVYVP NGNSPITSSF VGKLVGICPG STSHSSETNQ
0801: STVRTPDTVI GQTEGSTGCS TSFEHSDHKN IIGKQTSISE LLESEDSAEN GAEMFSKTDM TGRNNMNQVS ASSFSSIAQR FLANTLQRRT PKYTDLPMSS
0901: VIVNTDANGT DESTQISSLA PNETTFEASQ FEKKTENDTN GLPKSSLFSS SHYSEKSSPP LEYMKISFHP MSAFEMSKLD LDFSDENLHE NADDMMLPTF
1001: QLLPGSSVPQ LGSGSESEDD TFGRSYSYSS YDDLSPRLYS NSELWDQEDA NGLEDHDMHN NPNQIGSFGA PISSFVEFEQ MDLSGAKSTV SLTDLGDDNG
1101: LGTLDSHPAG ELPNFDTLMA HQNEAFIPHN PVSLSPDEGQ LPPPPPLPPM QWRTMRQVAS VEEGRGSAAK EDMLESTSDL PPVHTPVQEE HLLPIAPPDQ
1201: QNLLPIAPPD QQGHAKENDR KVDGVKEISN PLDIEIRASL LQQIRDKSGQ QKLNGHEKSK AVGNDTKNLD EREELLQQIR SKTFNLRRTN ASKTNTSSPT
1301: TANSSVVAIL EKANAIRQAV ASDEGGDDDS WSDI
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.