Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 14.27 | 38.73 |
| Zm00001d032131_P001 | Maize | cytosol, extracellular, plastid | 5.64 | 36.81 |
| Zm00001d025835_P001 | Maize | cytosol | 4.79 | 36.0 |
| Zm00001d025836_P001 | Maize | cytosol | 4.79 | 36.0 |
| Solyc02g076840.2.1 | Tomato | nucleus | 40.89 | 29.52 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.89 | 29.48 |
| GSMUA_Achr10P... | Banana | cytosol | 36.1 | 28.54 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 35.04 | 25.62 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 29.71 | 25.6 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 34.61 | 25.33 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 34.72 | 25.19 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 34.4 | 25.18 |
| Os01t0208600-01 | Rice | cytosol | 34.08 | 23.99 |
| KXG31590 | Sorghum | cytosol | 34.4 | 23.54 |
| Zm00001d008906_P003 | Maize | cytosol | 32.8 | 22.08 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 2.88 | 19.01 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | ProteinID:CCB55684 | ProteinID:CCB55684.1 | ncoils:Coil |
| UniProt:F6HM96 | EMBL:FN595992 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030036 | InterPro:IPR003124 | PFscan:PS51082 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 |
| InterPro:SCAR/WAVE_fam | TIGR:TC60466 | UniParc:UPI0002107FB8 | ArrayExpress:VIT_10s0003g01270 | EnsemblPlantsGene:VIT_10s0003g01270 | EnsemblPlants:VIT_10s0003g01270.t01 |
| InterPro:WH2_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:2584419..2596685
Molecular Weight (calculated)
103824.0 Da
IEP (calculated)
4.536
GRAVY (calculated)
-0.723
Length
939 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLVRVEVRN EYGLGLHELY GDANREDPKA VLDGVAVAGL VGILRQLGDL AEFAAEVFHG LQEQVTTTAS RSHKLLVRVQ QIEAALPLLE KSILAQRSHI
101: HFAYTAGSNW HASIPNEQNH FIYHDLPRFI MDSYEECRDP PRLHLLDKFD TGGLGSCLKR YSDPTFFRRA SVGSDEANAE KAQRDKARKI KKKRSLQRNG
201: ELSRSASISN RSGRVQYTSA NVRGQTSPSR TVSTVDMALK SDLGDHSNSF DSRTGSGYIE CVFHLSSPIQ PEEQQPKGSS SGLKMQSHDT FDSASPDGQT
301: KLLENGFPHN SPQKQTGCSS SCVTWDEKTE IVEPKGQESD GDEASEMLPT ICNLETQERA PVSIRNVDEM DILLVDDPVS IRNVDEMDIL LVDENSPKSI
401: SGGNQIDEIE SETDNYMDAL NTIDSESEND FDCQTKREVE QYSSHFNNEG TEDRDNKTLG SEHHPSDLES CTASHSSSNQ GMSLNSPNSV PSVESVISNL
501: SSSTSPISNS QGPTDDKVRS SFCESQESSA DVSSVHSVKF WTNGGLLGLE PSKPPDFSVS AFEETSGHQS VSYQTYPETD FKKQFGRESP INSLSSSPPL
601: EQMKISFHPI NGFETSKLKL KFPDGSHCNE SIRDMFPSFQ LVPDPATPLH DIDFDSDDDT FCRSSPCMSD DCLSHHSESN SEQWECGETL INKDHELYDA
701: LCRISSTESV SSSQELEGVA HGTIRADSGH IANGVEPSQS GLLLDLPSFD AVNPLLKQEI KDDSDPRVLL EVQYPKESMP PPPPLPPLQW RALKPDSDMA
801: EEKQYVISEA LDHLFDLKLL ESTDSQHSEP VLARQQQNVE ANACKPKSNV IEKQDRQKSN GQKEVNEAAN GKKMDEREDF LEQIRTKSFS LRRTATPRLT
901: VMPTPATNVS VTAILEKANA IRQAVGSDDG EDDDNWSDT
101: HFAYTAGSNW HASIPNEQNH FIYHDLPRFI MDSYEECRDP PRLHLLDKFD TGGLGSCLKR YSDPTFFRRA SVGSDEANAE KAQRDKARKI KKKRSLQRNG
201: ELSRSASISN RSGRVQYTSA NVRGQTSPSR TVSTVDMALK SDLGDHSNSF DSRTGSGYIE CVFHLSSPIQ PEEQQPKGSS SGLKMQSHDT FDSASPDGQT
301: KLLENGFPHN SPQKQTGCSS SCVTWDEKTE IVEPKGQESD GDEASEMLPT ICNLETQERA PVSIRNVDEM DILLVDDPVS IRNVDEMDIL LVDENSPKSI
401: SGGNQIDEIE SETDNYMDAL NTIDSESEND FDCQTKREVE QYSSHFNNEG TEDRDNKTLG SEHHPSDLES CTASHSSSNQ GMSLNSPNSV PSVESVISNL
501: SSSTSPISNS QGPTDDKVRS SFCESQESSA DVSSVHSVKF WTNGGLLGLE PSKPPDFSVS AFEETSGHQS VSYQTYPETD FKKQFGRESP INSLSSSPPL
601: EQMKISFHPI NGFETSKLKL KFPDGSHCNE SIRDMFPSFQ LVPDPATPLH DIDFDSDDDT FCRSSPCMSD DCLSHHSESN SEQWECGETL INKDHELYDA
701: LCRISSTESV SSSQELEGVA HGTIRADSGH IANGVEPSQS GLLLDLPSFD AVNPLLKQEI KDDSDPRVLL EVQYPKESMP PPPPLPPLQW RALKPDSDMA
801: EEKQYVISEA LDHLFDLKLL ESTDSQHSEP VLARQQQNVE ANACKPKSNV IEKQDRQKSN GQKEVNEAAN GKKMDEREDF LEQIRTKSFS LRRTATPRLT
901: VMPTPATNVS VTAILEKANA IRQAVGSDDG EDDDNWSDT
001: MPLVRLQVRN VYGLGQKELH TKVDREDPKA ILDDVAVSGL VGILRQLGDL TEFAAEIFHG IQEEVMITAS RSNKLKMRLK QIEAKVPTIQ KTVLAQTNHI
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
Arabidopsis Description
SCAR1Protein SCAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.