Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 58.79 | 56.57 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 35.17 | 36.88 |
| VIT_10s0003g01270.t01 | Wine grape | cytosol | 29.48 | 35.89 |
| GSMUA_Achr5P29540_001 | Banana | cytosol | 12.51 | 34.13 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 34.12 | 30.4 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 34.03 | 30.32 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 33.77 | 30.06 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 33.86 | 29.91 |
| Os01t0208600-01 | Rice | cytosol | 34.21 | 29.31 |
| AT2G34150.2 | Thale cress | nucleus | 20.73 | 28.87 |
| CDY17225 | Canola | nucleus | 20.21 | 28.48 |
| KXG31590 | Sorghum | cytosol | 32.98 | 27.48 |
| Bra010847.1-P | Field mustard | nucleus | 22.83 | 27.19 |
| CDX90172 | Canola | nucleus | 22.83 | 27.19 |
| CDY43322 | Canola | nucleus | 22.05 | 26.44 |
| AT1G29170.1 | Thale cress | nucleus | 22.83 | 25.59 |
| Bra005450.1-P | Field mustard | nucleus | 19.68 | 25.34 |
| Zm00001d008906_P003 | Maize | cytosol | 30.8 | 25.23 |
| CDY63143 | Canola | nucleus | 19.6 | 25.23 |
| GSMUA_Achr5P29520_001 | Banana | cytosol | 3.94 | 25.0 |
| KRH42863 | Soybean | nucleus | 28.35 | 24.27 |
| Solyc02g076840.2.1 | Tomato | nucleus | 25.55 | 22.44 |
| CDX78876 | Canola | nucleus | 13.56 | 21.35 |
| GSMUA_Achr5P14370_001 | Banana | cytosol | 15.14 | 20.4 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 2.36 | 19.01 |
| KRH58965 | Soybean | nucleus | 16.36 | 18.89 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 17.59 | 16.09 |
| CDX78875 | Canola | extracellular, vacuole | 10.85 | 15.14 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 18.2 | 14.11 |
| AT4G18600.1 | Thale cress | nucleus | 17.94 | 10.11 |
| CDX99451 | Canola | nucleus | 16.71 | 10.02 |
| Bra013329.1-P | Field mustard | nucleus | 17.32 | 8.64 |
| GSMUA_Achr5P14360_001 | Banana | cytosol, nucleus | 6.91 | 4.57 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP21650_001 | EnsemblPlants:GSMUA_AchrUn_randomT21650_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG21650_001 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030036 | InterPro:SCAR/WAVE_fam | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF12 | SEG:seg | UniParc:UPI000295C580 |
| UniProt:M0UB73 | MapMan:20.2.2.2.4 | : | : | : | : |
Description
Putative SCAR-like protein 2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG21650_001]
Coordinates
chrchrUn_random:+:105904318..105911756
Molecular Weight (calculated)
126279.0 Da
IEP (calculated)
4.584
GRAVY (calculated)
-0.684
Length
1143 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPVVRLEVRN EYGLGDPELF RGAVRKEDPK AILDGVAVAG LVGILRQLGD LAEFAADVFH DLHEQITATA GRGRKLMTRV RNIESALPSV EKAFKEQTSH
0101: IHFAYVAGSD WHAHIRVEQS LLLSSELPGF MMDSYEECRD PPRLFLLDKF DHAGTGACLK RYSDPSYFKR TWAASQMQRS ETVRKEKKFH TIKRKGSRLR
0201: NGKVQHSVYM SQRDCRTTNS DGCTRFTSPS IDGQSLSAEN ISIADTKLNP EFSSRSTSFG SKTKESYVEQ TSYVNPPVVP DELDYNEVPI PNLHSKDSSL
0301: CVSVLHDEPT ADCLDDVSQH DSLQEQSIPR SSSVTWDEKI EIFKPTSPVS YDDILVDRVQ DSEDIVRVED LEPLQVNSIP ENTEHAEIES LNEEDILFQS
0401: SKSPVALSDV NHFDEVTSET DNYVDAPNTL DSETETETEC HTKREVESLS NFSSQGMESR TEMSRVIVVQ NPDSSDVEAP NSSHSSLNQD ATPNFLHLSS
0501: SDGSELVQSP YDTEFVQNQE HSVVNDFCKS NALDISETKD HECECIDSSH SPKSGTSSSR TMMLAETTAE KSILRCSTFT DVSNAPSIQL WTNGGLFGVE
0601: PSKPPDLGVL NTQSKNSISN SRNFASDFSS CTVKSQTLVN ELDAKSDAKV MQNEPSSVDL SSEMKVDGEH SNLDSSIQGS SADDQSPLRA NYSTGSRQDG
0701: PSQSSMGVSS SFSELAQRFL ANTIQRKALL STPLGNTSTE IRKPDGTSCV NDSKEASNGV VSQASHEQST NEKVASISAK EPVSLTSRYS EQSSPPLEYM
0801: RISFHPMNGL ENPKLKLEFS NGSLHDNSED FAFPSFQLLQ GPVDSLLDVC SDSDDDTFCR SCPYSSEDLL SPRSYSISEQ WEQDERSEYI DHELNGVLDK
0901: FQSSVISISR SVEFEQSNDS NMNKPGGLEK FDTIVDNSKV PFQSGSTMEL PGLDSVLSLR NQQERICYST PEDLAKVEVQ SKDEMPPPPP LPPVQWRTSK
1001: SSVTDVTDAN TASNFNNLDG LQALRCAPSE KKEQHLPRSP FIVGATSPHC NEKQDQQKLN GPKRSTHCVS HKEVDTREDL LHQIRNKSFN LRRTAKSTPS
1101: NIPRPTTDAT SGNVAAILKK ASAIRQAFVS SDEGGDDDSW SDA
0101: IHFAYVAGSD WHAHIRVEQS LLLSSELPGF MMDSYEECRD PPRLFLLDKF DHAGTGACLK RYSDPSYFKR TWAASQMQRS ETVRKEKKFH TIKRKGSRLR
0201: NGKVQHSVYM SQRDCRTTNS DGCTRFTSPS IDGQSLSAEN ISIADTKLNP EFSSRSTSFG SKTKESYVEQ TSYVNPPVVP DELDYNEVPI PNLHSKDSSL
0301: CVSVLHDEPT ADCLDDVSQH DSLQEQSIPR SSSVTWDEKI EIFKPTSPVS YDDILVDRVQ DSEDIVRVED LEPLQVNSIP ENTEHAEIES LNEEDILFQS
0401: SKSPVALSDV NHFDEVTSET DNYVDAPNTL DSETETETEC HTKREVESLS NFSSQGMESR TEMSRVIVVQ NPDSSDVEAP NSSHSSLNQD ATPNFLHLSS
0501: SDGSELVQSP YDTEFVQNQE HSVVNDFCKS NALDISETKD HECECIDSSH SPKSGTSSSR TMMLAETTAE KSILRCSTFT DVSNAPSIQL WTNGGLFGVE
0601: PSKPPDLGVL NTQSKNSISN SRNFASDFSS CTVKSQTLVN ELDAKSDAKV MQNEPSSVDL SSEMKVDGEH SNLDSSIQGS SADDQSPLRA NYSTGSRQDG
0701: PSQSSMGVSS SFSELAQRFL ANTIQRKALL STPLGNTSTE IRKPDGTSCV NDSKEASNGV VSQASHEQST NEKVASISAK EPVSLTSRYS EQSSPPLEYM
0801: RISFHPMNGL ENPKLKLEFS NGSLHDNSED FAFPSFQLLQ GPVDSLLDVC SDSDDDTFCR SCPYSSEDLL SPRSYSISEQ WEQDERSEYI DHELNGVLDK
0901: FQSSVISISR SVEFEQSNDS NMNKPGGLEK FDTIVDNSKV PFQSGSTMEL PGLDSVLSLR NQQERICYST PEDLAKVEVQ SKDEMPPPPP LPPVQWRTSK
1001: SSVTDVTDAN TASNFNNLDG LQALRCAPSE KKEQHLPRSP FIVGATSPHC NEKQDQQKLN GPKRSTHCVS HKEVDTREDL LHQIRNKSFN LRRTAKSTPS
1101: NIPRPTTDAT SGNVAAILKK ASAIRQAFVS SDEGGDDDSW SDA
001: MPLVRLQVRN VYGLGQKELH TKVDREDPKA ILDDVAVSGL VGILRQLGDL TEFAAEIFHG IQEEVMITAS RSNKLKMRLK QIEAKVPTIQ KTVLAQTNHI
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
Arabidopsis Description
SCAR1Protein SCAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.