Factsheet for GSMUA_Achr5P09480_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 1
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P15470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	GSMUA_Achr10P...	AT1G29170.1	17267444
AT1G30825.1	GSMUA_Achr2P15470_001	AT1G29170.1	17267444
AT1G30825.1	GSMUA_AchrUn_...	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0654300-01	Rice	cytosol	16.31	82.81
KXG38865	Sorghum	peroxisome	77.85	78.33
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	77.54	78.02
TraesCS3D01G237300.1	Wheat	cytosol	77.23	77.71
TraesCS3B01G262900.2	Wheat	cytosol	77.23	77.71
VIT_01s0011g05400.t01	Wine grape	mitochondrion	76.62	75.91
KRH07553	Soybean	cytosol	63.38	74.91
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	77.85	72.7
OQU88580	Sorghum	plasma membrane	51.08	71.86
HORVU3Hr1G059010.8	Barley	mitochondrion	77.23	71.71
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	71.38	70.73
PGSC0003DMT400067754	Potato	mitochondrion	71.38	70.73
AT1G30825.1	Thale cress	mitochondrion	65.85	67.3
Bra014893.1-P	Field mustard	mitochondrion	64.92	66.35
CDX98226	Canola	cytosol, mitochondrion	64.31	65.72
Bra023140.1-P	Field mustard	mitochondrion	64.31	65.31
CDY02334	Canola	mitochondrion	64.31	65.11
CDY58050	Canola	mitochondrion	64.0	64.8
CDX77566	Canola	mitochondrion	56.0	62.54
KRH45310	Soybean	mitochondrion	39.08	56.7
GSMUA_Achr1P00910_001	Banana	cytosol	37.54	35.36

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	InterPro:ARPC2	InterPro:ARPC2/4	GO:GO:0003674	GO:GO:0003779
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030041	GO:GO:0030833	GO:GO:0034314	EnsemblPlantsGene:GSMUA_Achr5G09480_001	EnsemblPlants:GSMUA_Achr5P09480_001	EnsemblPlants:GSMUA_Achr5T09480_001
InterPro:IPR034666	UniProt:M0SX27	PFAM:PF04045	PANTHER:PTHR12058	PANTHER:PTHR12058:SF1	SUPFAM:SSF69645
UniParc:UPI000294DD51	SEG:seg	:	:	:	:

Description

Putative Actin-related protein 2/3 complex subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G09480_001]

Coordinates

chr5:-:6802924..6808195

Molecular Weight (calculated)

36407.4 Da

IEP (calculated)

9.707

GRAVY (calculated)

-0.080

Length

325 amino acids

Sequence
(BLAST)

001: MILLQSPSRF LLQILQDRLL SPDKGVDLDC HSVEFDDVRY HIQFSMRNPH VVVLSVSLPI PPPEAIFFDG LPFGAIEAIK AAYGAVAQIL DPPKDGYNLT
101: MKLNLSKLPS DEEQRQALLV KIASVREVVL GAPLRFVLKN LATKTVAPEM DQLIALVHRP KESFFLLPQQ AEKVTVVYPM RFQDSTDIVL ATSFLQELIE
201: SRRTAGLNNA PSCMWSPSPP LELKGAPAQA LTANAGFVTF VIFPRHVEGK KIDRTVWSLL TFHAYVSYHV KCSEGFMHTR MRRRVESLIQ ALDRAKPESE
301: KSKKLVSGKS FKRLSLNEAR SNSNS

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.