CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytoskeleton, cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	KXG31590	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0654300-01	Rice	cytosol	18.61	67.19
KXG38865	Sorghum	peroxisome	90.04	64.4
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	83.98	60.06
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	90.04	59.77
TraesCS3D01G237300.1	Wheat	cytosol	82.68	59.13
TraesCS3B01G262900.2	Wheat	cytosol	82.25	58.82
KRH07553	Soybean	cytosol	69.26	58.18
HORVU3Hr1G059010.8	Barley	mitochondrion	85.28	56.29
GSMUA_Achr5P09480_001	Banana	mitochondrion	71.86	51.08
PGSC0003DMT400067754	Potato	mitochondrion	68.4	48.17
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	68.4	48.17
VIT_01s0011g05400.t01	Wine grape	mitochondrion	67.97	47.87
Bra014893.1-P	Field mustard	mitochondrion	65.8	47.8
Bra023140.1-P	Field mustard	mitochondrion	65.8	47.5
CDX98226	Canola	cytosol, mitochondrion	65.37	47.48
CDY02334	Canola	mitochondrion	65.8	47.35
CDY58050	Canola	mitochondrion	65.37	47.04
AT1G30825.1	Thale cress	mitochondrion	64.5	46.86
CDX77566	Canola	mitochondrion	56.71	45.02
KRH45310	Soybean	mitochondrion	38.1	39.29
EES12487	Sorghum	nucleus	30.3	17.95

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	UniProt:A0A1W0W2I3	InterPro:ARPC2	InterPro:ARPC2/4	ncoils:Coil
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005885	GO:GO:0008150	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0030041	GO:GO:0030833	GO:GO:0034314	InterPro:IPR034666
EnsemblPlants:OQU88580	ProteinID:OQU88580	ProteinID:OQU88580.1	PFAM:PF04045	PANTHER:PTHR12058	PANTHER:PTHR12058:SF1
EnsemblPlantsGene:SORBI_3002G056701	SUPFAM:SSF69645	UniParc:UPI0009DC835A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:5502360..5507391

Molecular Weight (calculated)

25938.0 Da

IEP (calculated)

9.344

GRAVY (calculated)

0.015

Length

231 amino acids

Sequence
(BLAST)

001: MVLSVALPLP PPEAILYDGL PLGAIEAIKA AYGPVVQILD PPKDGFDLTM KINLTKLPPD EEQRNAILTQ IASIREVVLG APLKLLLKHL ASRTVAPNVD
101: KLVALVHRPN ESFFLAPQAD KVTIMYPMRF QDSIDIVLAT SFLQYPSFLH ETILPHRLLI CAVVYPRHVE GKKLDRTVWN LLTFHAYCSE GFMHTRMRRR
201: VESLIQALDR AKSDAEKLKK LSLKNEGDSR S

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.