Factsheet for Zm00001d007806_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome
Any Predictor:	mitochondrion, peroxisome, plasma membrane
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008906_P003
Zm00001d025835_P001
Zm00001d025836_P001
Zm00001d032131_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	Zm00001d008906_P003	AT1G29170.1	17267444
AT1G30825.1	Zm00001d025835_P001	AT1G29170.1	17267444
AT1G30825.1	Zm00001d025836_P001	AT1G29170.1	17267444
AT1G30825.1	Zm00001d032131_P001	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38865	Sorghum	peroxisome	90.23	97.21
Os01t0654300-01	Rice	cytosol	16.67	90.62
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	83.62	90.09
OQU88580	Sorghum	plasma membrane	59.77	90.04
TraesCS3D01G237300.1	Wheat	cytosol	83.05	89.47
TraesCS3B01G262900.2	Wheat	cytosol	83.05	89.47
HORVU3Hr1G059010.8	Barley	mitochondrion	84.48	84.0
GSMUA_Achr5P09480_001	Banana	mitochondrion	72.7	77.85
KRH07553	Soybean	cytosol	57.76	73.09
VIT_01s0011g05400.t01	Wine grape	mitochondrion	66.38	70.43
PGSC0003DMT400067754	Potato	mitochondrion	64.37	68.29
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	64.08	67.99
AT1G30825.1	Thale cress	mitochondrion	60.06	65.72
Bra014893.1-P	Field mustard	mitochondrion	59.48	65.09
CDX98226	Canola	cytosol, mitochondrion	58.91	64.47
Bra023140.1-P	Field mustard	mitochondrion	58.91	64.06
CDY02334	Canola	mitochondrion	58.91	63.86
CDY58050	Canola	mitochondrion	58.62	63.55
CDX77566	Canola	mitochondrion	52.3	62.54
KRH45310	Soybean	mitochondrion	34.77	54.02
Zm00001d003039_P001	Maize	nucleus	27.01	22.87

Protein Annotations

EntrezGene:100282664	MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	UniProt:A0A1D6F8Y1	InterPro:ARPC2	InterPro:ARPC2/4
ncoils:Coil	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005885	GO:GO:0008150
GO:GO:0009987	GO:GO:0015629	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0030041
GO:GO:0030833	GO:GO:0034314	InterPro:IPR034666	ProteinID:ONM27622.1	PFAM:PF04045	SUPFAM:SSF69645
TMHMM:TMhelix	UniParc:UPI00084484C1	EnsemblPlantsGene:Zm00001d007806	EnsemblPlants:Zm00001d007806_P003	EnsemblPlants:Zm00001d007806_T003	SEG:seg

Description

Actin-related protein 2/3 complex subunit 2A

Coordinates

chr2:-:239998752..240009892

Molecular Weight (calculated)

39275.1 Da

IEP (calculated)

9.067

GRAVY (calculated)

0.112

Length

348 amino acids

Sequence
(BLAST)

001: MILLQSPSRF LLQILQDRVL SGEKGMDIDC HTVEFDDVRY HIQFSMRNPK VMVLSVALPL PPPEAILYDG LPLGAIEAIK AAYGPVVQIL DPPKDGFDLT
101: MKINLTKLPL DEEQRNTILT QIASIREVVL GAPLKLLLKH LASKTVAPNV NNLVALVHRP NESFFLAPQA DKVTIVYPMR FQDSIDIVLA TSFLQVFWIL
201: PFVSFISFLA YCSSWSFVFY EFVEARRTAA LNNVPSCMWS PVPPLELKGV SADALNANAG FVTFVVYPRH VEGKKLDRTV WNLLTFHAYV SYHVKCSEGF
301: MHTRMRRRVE SLIQALDRAK SDAEKLKKLV HGGSFKRLSL KNEGDSRF

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.