Factsheet for Os01t0654300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0208600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	Os01t0208600-01	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88580	Sorghum	plasma membrane	67.19	18.61
TraesCS3D01G237300.1	Wheat	cytosol	89.06	17.65
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	89.06	17.65
TraesCS3B01G262900.2	Wheat	cytosol	87.5	17.34
KXG38865	Sorghum	peroxisome	87.5	17.34
KRH07553	Soybean	cytosol	71.88	16.73
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	90.62	16.67
GSMUA_Achr5P09480_001	Banana	mitochondrion	82.81	16.31
HORVU3Hr1G059010.8	Barley	mitochondrion	87.5	16.0
VIT_01s0011g05400.t01	Wine grape	mitochondrion	78.12	15.24
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	70.31	13.72
PGSC0003DMT400067754	Potato	mitochondrion	70.31	13.72
Bra014893.1-P	Field mustard	mitochondrion	67.19	13.52
CDX98226	Canola	cytosol, mitochondrion	67.19	13.52
Bra023140.1-P	Field mustard	mitochondrion	67.19	13.44
CDY58050	Canola	mitochondrion	67.19	13.4
CDY02334	Canola	mitochondrion	67.19	13.4
AT1G30825.1	Thale cress	mitochondrion	65.62	13.21
Os04t0512300-01	Rice	cytosol	34.38	5.98
CDX77566	Canola	mitochondrion	26.56	5.84
KRH45310	Soybean	mitochondrion	7.81	2.23

Protein Annotations

Gene3D:3.30.1460.20	MapMan:35.1	InterPro:ARPC2	InterPro:ARPC2/4	ProteinID:BAF05661.1	ProteinID:BAS73482.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003779	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030041
GO:GO:0030833	GO:GO:0034314	GO:GO:0051015	InterPro:IPR034666	EnsemblPlantsGene:Os01g0654300	EnsemblPlants:Os01t0654300-01
PFAM:PF04045	PANTHER:PTHR12058	PANTHER:PTHR12058:SF0	UniProt:Q0JKR7	SUPFAM:SSF69645	UniParc:UPI0000DD8C3C

Description

Similar to ARP2/3 complex 34 kDa subunit. (Os01t0654300-01)

Coordinates

chr1:+:26530279..26532048

Molecular Weight (calculated)

7339.9 Da

IEP (calculated)

10.624

GRAVY (calculated)

-0.562

Length

64 amino acids

Sequence
(BLAST)

1: SLLTFHAYVS YHVKCSEGFM HTRMRRRVET LIQALDRAKS DAEKLKKLVN GGSFKRLSLN NDGN

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.