CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90172
CDY43322

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	CDX90172	AT1G29170.1	17267444
AT1G30825.1	CDY43322	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02334	Canola	mitochondrion	99.38	99.38
Bra023140.1-P	Field mustard	mitochondrion	98.75	99.06
CDX98226	Canola	cytosol, mitochondrion	95.02	95.91
AT1G30825.1	Thale cress	mitochondrion	93.46	94.34
CDX77566	Canola	mitochondrion	83.18	91.75
VIT_01s0011g05400.t01	Wine grape	mitochondrion	69.78	68.29
KRH07553	Soybean	cytosol	57.63	67.27
Os01t0654300-01	Rice	cytosol	13.4	67.19
PGSC0003DMT400067754	Potato	mitochondrion	68.54	67.07
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	68.22	66.77
OQU88580	Sorghum	plasma membrane	47.04	65.37
GSMUA_Achr5P09480_001	Banana	mitochondrion	64.8	64.0
KXG38865	Sorghum	peroxisome	63.86	63.47
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	62.93	62.54
TraesCS3B01G262900.2	Wheat	cytosol	62.62	62.23
TraesCS3D01G237300.1	Wheat	cytosol	61.99	61.61
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	63.55	58.62
HORVU3Hr1G059010.8	Barley	mitochondrion	62.93	57.71
KRH45310	Soybean	mitochondrion	37.69	54.02
CDY23743	Canola	cytosol	17.76	36.31
CDY17169	Canola	cytosol	33.96	28.84
CDY37726	Canola	cytosol	14.02	26.16

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	GO:A0A078J300	UniProt:A0A078J300	InterPro:ARPC2	InterPro:ARPC2/4
EnsemblPlants:CDY58050	ProteinID:CDY58050	ProteinID:CDY58050.1	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030041
GO:GO:0030833	GO:GO:0034314	EnsemblPlantsGene:GSBRNA2T00023036001	InterPro:IPR034666	PFAM:PF04045	PANTHER:PTHR12058
SUPFAM:SSF69645	UniParc:UPI0004EB5A65	SEG:seg	:	:	:

Description

BnaC05g51270DArp2/3 complex 34 kDa subunit [Source:UniProtKB/TrEMBL;Acc:A0A078J300]

Coordinates

chrLK033630:-:47190..49272

Molecular Weight (calculated)

36158.8 Da

IEP (calculated)

9.853

GRAVY (calculated)

-0.193

Length

321 amino acids

Sequence
(BLAST)

001: MMLQSHSRFL LQTLLTRAQN LDKAVELDYQ WIEFDDVRYH VQVTIKNPNI LLLSVSLPNP PPEAMSFDGL PLGAIEAIKT TYGTGFQILD PPRDGFSLTL
101: KLNFSKVRPD EAYRNSLLTK LASIREVVMG APLKIILKHL ASRTVAPELD RLVAIMHRPN ETFFLVPQAD KVTVAFPMRF KDSVDTILAT SFLKQFVEAR
201: RAASLSSAPS CSWSPTAPQE LEGAPKETLS ANAGFVTFVI MPRHVEGEKL DPTVWNLSTF HAYVSYHVKC SEGFMHTRMR RRVESMIQAL DQAKPLEKTR
301: SMNNKSFKRL GLNDANHTTS K

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.