Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010847.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY43322 | Canola | nucleus | 68.75 | 69.25 |
| AT1G29170.1 | Thale cress | nucleus | 52.5 | 49.41 |
| CDY17225 | Canola | nucleus | 33.44 | 39.58 |
| CDY63143 | Canola | nucleus | 29.58 | 31.98 |
| Zm00001d025836_P001 | Maize | cytosol | 3.96 | 30.4 |
| Zm00001d025835_P001 | Maize | cytosol | 3.96 | 30.4 |
| Zm00001d032131_P001 | Maize | cytosol, extracellular, plastid | 4.06 | 27.08 |
| CDX78876 | Canola | nucleus | 18.33 | 24.24 |
| KRH42863 | Soybean | nucleus | 32.29 | 23.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.19 | 22.83 |
| GSMUA_Achr10P... | Banana | cytosol | 26.77 | 21.63 |
| Solyc02g076840.2.1 | Tomato | nucleus | 28.96 | 21.37 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 28.12 | 21.03 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 28.23 | 20.94 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 27.29 | 20.42 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 23.12 | 20.37 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 27.19 | 20.34 |
| KXG31590 | Sorghum | cytosol | 27.81 | 19.46 |
| Os01t0208600-01 | Rice | cytosol | 26.98 | 19.42 |
| Zm00001d008906_P003 | Maize | cytosol | 25.31 | 17.42 |
| CDY69042 | Canola | nucleus | 17.29 | 13.93 |
| CDX78875 | Canola | extracellular, vacuole | 11.88 | 13.92 |
| CDY39815 | Canola | nucleus | 14.27 | 13.77 |
| CDX91460 | Canola | cytosol | 18.12 | 12.45 |
| CDX99451 | Canola | nucleus | 21.77 | 10.97 |
Protein Annotations
| EnsemblPlants:CDX90172 | EnsemblPlantsGene:GSBRNA2T00150719001 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:A0A078DMH3 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030036 | InterPro:SCAR/WAVE_fam | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 | ProteinID:CDX90172 | ProteinID:CDX90172.1 |
| SEG:seg | UniParc:UPI00025454B8 | MapMan:20.2.2.2.4 | : | : | : |
Description
BnaA08g18120D
Coordinates
chrLK031862:-:470098..474606
Molecular Weight (calculated)
105698.0 Da
IEP (calculated)
4.495
GRAVY (calculated)
-0.762
Length
960 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSRLGVRN VYGTSQQAEF YGNVDREDPE AILNGVAVSG LIGVLRQLGD LAESAAEIFQ GIQEEVMATA SRSNQLKMRL QHIEATVPPL EKAVLAQTTH
101: LHFAYTGGVE WHPRIPHEQN HFIHDDLPNS FMDHYEECRD PPRLHMLDKF DINGPGSCLK RYSDPTYFRR ASSSLVKGNN KFQNNNMSCK IKKKKSSSRS
201: RDMSRLASMA NQNARKTLTS FSFSGQTSSS KSASTSDMEK RSDLQDHHSH TYDCLSTATS SLKAGEKQKG GLGSSSLTPG SCTIGSVLSE CETEDEHDNL
301: QFTPLQGQSA VGSSCVSWDE KAEIVEEPLG VQTDEASVVD ALDEKATSYG EGTGRVDIEN AESEPGLQQS NGIDEVKEMK AGSEIVREPR DSSEHETESE
401: GECFVDALNS IESESENEQG LKTSLEAVSS PCGVTGERLE KSSNKVEESC RSMDNGYLNA TDEMNHQDPL ESDNRSRSPL NDVCTTSNIT CGEDKIGFTV
501: VPAPENSLSD SSNPLYHSEH QKSEAKVSGE VEAIKIWTNG GLLGLNPSKP PVLEVPSLDC KAEERTFGSA EAEKDKSDDL VEHVLDTSSL GTQNLTVDQR
601: ECHETSSYGV FGGLSQKLFT NSFRRRDSLS HDNRQALPAT IPENDEVTTE KSRFGEQDKV LFREEAPIDW FASSPPLQHM KISLNPVDNT LQASRLKLKF
701: SDEDNNSNNT FPSFQLLPEA ATSLPDSCSD DDTFCMTSDI DYLSDYHSLS DSEQWEEHND SHERKEHDSF HESTHVDNNG EPSSLDTEAE NGCVALNFSY
801: LQSPVEPLPP PFPPAQWMVS KTGSETISEN KTTQSIQLQD ALRFAFEKHT SSSIVNKEEP NTVASAPKPE TKVHVKNNVK EDKQNANEKE TDADDFLQQI
901: RTQHVNLKPV VMTRTLSTAA AATTDPAINI KISAMLEKAN SIRQAVASND GDESDTWSDT
101: LHFAYTGGVE WHPRIPHEQN HFIHDDLPNS FMDHYEECRD PPRLHMLDKF DINGPGSCLK RYSDPTYFRR ASSSLVKGNN KFQNNNMSCK IKKKKSSSRS
201: RDMSRLASMA NQNARKTLTS FSFSGQTSSS KSASTSDMEK RSDLQDHHSH TYDCLSTATS SLKAGEKQKG GLGSSSLTPG SCTIGSVLSE CETEDEHDNL
301: QFTPLQGQSA VGSSCVSWDE KAEIVEEPLG VQTDEASVVD ALDEKATSYG EGTGRVDIEN AESEPGLQQS NGIDEVKEMK AGSEIVREPR DSSEHETESE
401: GECFVDALNS IESESENEQG LKTSLEAVSS PCGVTGERLE KSSNKVEESC RSMDNGYLNA TDEMNHQDPL ESDNRSRSPL NDVCTTSNIT CGEDKIGFTV
501: VPAPENSLSD SSNPLYHSEH QKSEAKVSGE VEAIKIWTNG GLLGLNPSKP PVLEVPSLDC KAEERTFGSA EAEKDKSDDL VEHVLDTSSL GTQNLTVDQR
601: ECHETSSYGV FGGLSQKLFT NSFRRRDSLS HDNRQALPAT IPENDEVTTE KSRFGEQDKV LFREEAPIDW FASSPPLQHM KISLNPVDNT LQASRLKLKF
701: SDEDNNSNNT FPSFQLLPEA ATSLPDSCSD DDTFCMTSDI DYLSDYHSLS DSEQWEEHND SHERKEHDSF HESTHVDNNG EPSSLDTEAE NGCVALNFSY
801: LQSPVEPLPP PFPPAQWMVS KTGSETISEN KTTQSIQLQD ALRFAFEKHT SSSIVNKEEP NTVASAPKPE TKVHVKNNVK EDKQNANEKE TDADDFLQQI
901: RTQHVNLKPV VMTRTLSTAA AATTDPAINI KISAMLEKAN SIRQAVASND GDESDTWSDT
0001: MPRNVYGMNQ SEVYRNVDRE DPKAILNGVA VTGLVGVLRQ LGDLAEFAAE IFHGIQEEVM ATASRSNQLK IRLQHIEATV PPLEKAMLAQ TTHIHFAYTG
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT
Arabidopsis Description
SCAR3Protein SCAR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP46]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.