Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G01730.1 | Thale cress | cytosol | 34.87 | 29.66 |
| CDY17225 | Canola | nucleus | 14.67 | 18.0 |
| CDX91460 | Canola | cytosol | 24.12 | 17.17 |
| CDX78876 | Canola | nucleus | 11.96 | 16.39 |
| CDY69042 | Canola | nucleus | 19.3 | 16.11 |
| CDY63143 | Canola | nucleus | 13.97 | 15.65 |
| CDX90172 | Canola | nucleus | 13.77 | 14.27 |
| CDY43322 | Canola | nucleus | 13.47 | 14.06 |
| Os03t0298700-01 | Rice | cytosol | 18.39 | 14.04 |
| EER92402 | Sorghum | nucleus | 18.19 | 13.91 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 17.29 | 13.77 |
| Zm00001d028803_P002 | Maize | nucleus | 16.48 | 13.75 |
| Zm00001d047701_P002 | Maize | nucleus | 17.39 | 13.43 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 17.29 | 13.19 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 17.09 | 12.88 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 16.98 | 12.87 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 18.19 | 12.28 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 10.25 | 8.7 |
| CDX78875 | Canola | extracellular, vacuole | 7.14 | 8.67 |
| CDX99451 | Canola | nucleus | 15.78 | 8.24 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | GO:A0A078HMQ5 | UniProt:A0A078HMQ5 | EnsemblPlants:CDY39815 |
| ProteinID:CDY39815 | ProteinID:CDY39815.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0010287 |
| GO:GO:0016043 | GO:GO:0030036 | GO:GO:0051127 | EnsemblPlantsGene:GSBRNA2T00068629001 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF12 |
| InterPro:SCAR/WAVE_fam | UniParc:UPI0004EF3333 | SEG:seg | : | : | : |
Description
BnaA09g10670DBnaA09g10670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMQ5]
Coordinates
chrLK032457:+:291911..296121
Molecular Weight (calculated)
109673.0 Da
IEP (calculated)
4.146
GRAVY (calculated)
-0.692
Length
995 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLTRYQIRN EYGLADKELY SDKEDAEVLL EGSSMAGLVG LLRQLGDLAE FAGEVFHNLH EELMTTSARG QGLAIRLQQL EAQVPNSVEI PILSQTDHSI
101: FFYDPGKSCN ISGLEWHSTL KTEEHLISPH KLPHCIIDSY EECRGPPQLY LLDKFDVDGS GSCLKRYSDP SLLKKLTASQ LSKDERPSKP KKKASHISNG
201: ERTLGDSQTS HAKLNQLFLM DHAEDPEITV KLKRRHLNGP PPINSSSGTG YMEKFLKNSL PYCEIVHETL DQSSSAMETD EVATCNVRVD LSTPSLVYPN
301: NGETRKEREM EAIADDEREG GGAMVYNDTD APPASTETEA DKADVTQTGV LAANVLHHST EEGASEGTKD VQTNDGEDDH SQHVFSVETG SEMSLTGLVE
401: DQFCSLTNQE TEKEPDCLLI QNQHISTFDN FEDLSVDADA IHDSAVPKEE DETSSQDGYS VNTEHAGHAS TFEISSEAET LMLDTPRDVQ TGNITPSASY
501: WQEDALANSD LAEISSYSGK EDPQNMPIIA AGSSDGTDTQ RDGAGDNHTS LNDKASETVP EVALEVDPEE CLLGTQECLS PEYYIQTHSQ GGQESLSETD
601: SENTTAEAAA ESLPPQDVPL GVQYSTSEET LTCNENEAEV EALNAPHQGD ITSLNGNIPE SVLSMDPTDQ ENCLDVPMAP FSTSLHVTPM EDLEITPPLP
701: PLPPTQWWMG KLVDSVKTTE TQFSPVPSLG NNSFYIHRDE KIHNGLVQGT EALDQSEASV TADESHNTDV DPVEAVLTSA KTTLNEPSKA TEEEQSPSES
801: VAWESLLTPE ATPEAESTEG LEALEWFSQN LKEHTNPNLT KLEEEPQLDH PLEPPGETEG DNKSYEYNEK VEKLPRDKES LVLGIDRSML RKVSERNRTQ
901: LGARVDENDS LLEIIRSKSF NLRPADASVR HNFHVAAPIT NLKVAAILEK ANSLRHAMAG SDDDHDSDSW SEQRRTNLYF PLNYQYWFVH TYDMT
101: FFYDPGKSCN ISGLEWHSTL KTEEHLISPH KLPHCIIDSY EECRGPPQLY LLDKFDVDGS GSCLKRYSDP SLLKKLTASQ LSKDERPSKP KKKASHISNG
201: ERTLGDSQTS HAKLNQLFLM DHAEDPEITV KLKRRHLNGP PPINSSSGTG YMEKFLKNSL PYCEIVHETL DQSSSAMETD EVATCNVRVD LSTPSLVYPN
301: NGETRKEREM EAIADDEREG GGAMVYNDTD APPASTETEA DKADVTQTGV LAANVLHHST EEGASEGTKD VQTNDGEDDH SQHVFSVETG SEMSLTGLVE
401: DQFCSLTNQE TEKEPDCLLI QNQHISTFDN FEDLSVDADA IHDSAVPKEE DETSSQDGYS VNTEHAGHAS TFEISSEAET LMLDTPRDVQ TGNITPSASY
501: WQEDALANSD LAEISSYSGK EDPQNMPIIA AGSSDGTDTQ RDGAGDNHTS LNDKASETVP EVALEVDPEE CLLGTQECLS PEYYIQTHSQ GGQESLSETD
601: SENTTAEAAA ESLPPQDVPL GVQYSTSEET LTCNENEAEV EALNAPHQGD ITSLNGNIPE SVLSMDPTDQ ENCLDVPMAP FSTSLHVTPM EDLEITPPLP
701: PLPPTQWWMG KLVDSVKTTE TQFSPVPSLG NNSFYIHRDE KIHNGLVQGT EALDQSEASV TADESHNTDV DPVEAVLTSA KTTLNEPSKA TEEEQSPSES
801: VAWESLLTPE ATPEAESTEG LEALEWFSQN LKEHTNPNLT KLEEEPQLDH PLEPPGETEG DNKSYEYNEK VEKLPRDKES LVLGIDRSML RKVSERNRTQ
901: LGARVDENDS LLEIIRSKSF NLRPADASVR HNFHVAAPIT NLKVAAILEK ANSLRHAMAG SDDDHDSDSW SEQRRTNLYF PLNYQYWFVH TYDMT
0001: MDSYEECHGP PQLFLLDKFD VAGSGSCLKR YSDPSLLKTH TTSAVVATSK LGKDKRLRQS KKKGSHTTIK ETPEDSRTSH AKLHQLFFLE HVENGHRNPE
0101: FHVKLKRRQL NGPPINSSSG ASYMEKFLKN SSPYCERVHG TMDQSSPAME TEVTVCSEQE DLPIPSLVYS NSGGTRKYNE MEIESIAGHE ILEIPFVPHE
0201: ITVNEKSPVV CLESSSSVNL CCKTNNDADS PASTESEVKE AGSDDKAGCD HGFPGFGQPQ ICTNAEVNQT EVLTQFSNVL RHSPEEGESS LLCTDIQRAS
0301: PESKPHKAEE AAVDLDESFS QMTPDIDSAG MGTLEILQTP FSLSCYESPA NLPEDSGSHL ELQSNKANAE ACEVFEVRRD PMLNISPETH LLKVTQVPQD
0401: AYEGGTNDVH SQHVFSVETA SEISVSALVE DQFSSITNQE IEALESEDIS SEAGHFIPDT KKSLNETSVA LESDFLLPNH YISTFDNFED LSLSADAQDY
0501: AAPKEDETNS QDGSSMNPAQ SKHISTSEIS SENGTLMSDT PRDLHTGYGS LSASSCLEDG LANPDLAEIS SYSGQEDPQT MSIVSDDSSD PEVPIPDGTC
0601: FAGDVDHDNQ TGLNNKAIET VPQKELETIS DPQESLLGTE ECLSSEYCLQ IQNQRQESPS ETGSANSRTS SDESPPTQNG SVGVQSSPLD VFPSSITEIE
0701: ALHAPYQEIF TSLNDHISES VLSKGLTDEE DFLNVSPESI LPLSTSLHET PQANPEITPP LPPLPPTQWW MGKLVESTEM PSLAGSGNNS FNIQRDENTQ
0801: NGSVQANEAQ YPSEVSVTDG ENHNFHIYTE ESKATEEQSP SGVNGTSDTY MESKHKCLNR TPEDSFSLAE SAQGLEADWR TEAMALEWFS QNLREHNNPH
0901: PAKLEEEEPQ VDHPLEKPGQ TKFRQTLRDN NSYNQNQKAG KLKRDEDTLV IGIDRSMLRK VSEGNRTHVG ARVDENDSLL EIIRSKSFNL RPADASGRPN
1001: FQVAVPKTNL KVAAILEKAN TLRQAMAGSD DEHDSDSWSE
0101: FHVKLKRRQL NGPPINSSSG ASYMEKFLKN SSPYCERVHG TMDQSSPAME TEVTVCSEQE DLPIPSLVYS NSGGTRKYNE MEIESIAGHE ILEIPFVPHE
0201: ITVNEKSPVV CLESSSSVNL CCKTNNDADS PASTESEVKE AGSDDKAGCD HGFPGFGQPQ ICTNAEVNQT EVLTQFSNVL RHSPEEGESS LLCTDIQRAS
0301: PESKPHKAEE AAVDLDESFS QMTPDIDSAG MGTLEILQTP FSLSCYESPA NLPEDSGSHL ELQSNKANAE ACEVFEVRRD PMLNISPETH LLKVTQVPQD
0401: AYEGGTNDVH SQHVFSVETA SEISVSALVE DQFSSITNQE IEALESEDIS SEAGHFIPDT KKSLNETSVA LESDFLLPNH YISTFDNFED LSLSADAQDY
0501: AAPKEDETNS QDGSSMNPAQ SKHISTSEIS SENGTLMSDT PRDLHTGYGS LSASSCLEDG LANPDLAEIS SYSGQEDPQT MSIVSDDSSD PEVPIPDGTC
0601: FAGDVDHDNQ TGLNNKAIET VPQKELETIS DPQESLLGTE ECLSSEYCLQ IQNQRQESPS ETGSANSRTS SDESPPTQNG SVGVQSSPLD VFPSSITEIE
0701: ALHAPYQEIF TSLNDHISES VLSKGLTDEE DFLNVSPESI LPLSTSLHET PQANPEITPP LPPLPPTQWW MGKLVESTEM PSLAGSGNNS FNIQRDENTQ
0801: NGSVQANEAQ YPSEVSVTDG ENHNFHIYTE ESKATEEQSP SGVNGTSDTY MESKHKCLNR TPEDSFSLAE SAQGLEADWR TEAMALEWFS QNLREHNNPH
0901: PAKLEEEEPQ VDHPLEKPGQ TKFRQTLRDN NSYNQNQKAG KLKRDEDTLV IGIDRSMLRK VSEGNRTHVG ARVDENDSLL EIIRSKSFNL RPADASGRPN
1001: FQVAVPKTNL KVAAILEKAN TLRQAMAGSD DEHDSDSWSE
Arabidopsis Description
SCAR4Protein SCAR4 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.