Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047701_P002 | Maize | nucleus | 75.69 | 70.11 |
| EER92402 | Sorghum | nucleus | 73.09 | 67.03 |
| Os03t0298700-01 | Rice | cytosol | 51.97 | 47.58 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 48.03 | 43.41 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 47.02 | 43.02 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 47.19 | 42.88 |
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 11.4 | 39.31 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 37.22 | 37.85 |
| Zm00001d032131_P001 | Maize | cytosol, extracellular, plastid | 3.94 | 32.64 |
| Zm00001d025836_P001 | Maize | cytosol | 3.19 | 30.4 |
| Zm00001d025835_P001 | Maize | cytosol | 3.19 | 30.4 |
| Zm00001d022570_P001 | Maize | cytosol | 9.56 | 17.7 |
| CDY39815 | Canola | nucleus | 13.75 | 16.48 |
| CDY69042 | Canola | nucleus | 16.01 | 16.02 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 19.45 | 15.74 |
| AT5G01730.1 | Thale cress | cytosol | 15.34 | 15.64 |
| AT2G38440.1 | Thale cress | cytosol | 17.85 | 15.23 |
| KRH00374 | Soybean | cytosol | 16.85 | 15.14 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 15.84 | 15.13 |
| Bra005107.1-P | Field mustard | cytosol | 18.11 | 15.13 |
| KRH40820 | Soybean | cytosol | 16.68 | 14.63 |
| CDX91460 | Canola | cytosol | 16.93 | 14.45 |
| KRH76068 | Soybean | cytosol | 19.2 | 13.52 |
| Zm00001d027498_P001 | Maize | mitochondrion | 3.1 | 13.5 |
| Zm00001d008906_P003 | Maize | cytosol | 15.67 | 13.4 |
| KRH65511 | Soybean | cytosol | 18.86 | 13.33 |
| Solyc09g014980.2.1 | Tomato | cytosol | 17.77 | 12.44 |
| Zm00001d013353_P001 | Maize | nucleus | 3.35 | 9.73 |
| Zm00001d034616_P001 | Maize | cytosol | 14.25 | 7.94 |
Protein Annotations
| Gene3D:1.20.5.340 | EntrezGene:103634520 | MapMan:20.2.2.2.4 | UniProt:A0A1D6JZQ6 | GO:GO:0003674 | GO:GO:0003779 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 | InterPro:IPR003124 | ProteinID:ONL97064.1 |
| PFscan:PS51082 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF10 | InterPro:SCAR/WAVE_fam | UniParc:UPI0004DEA9D5 | InterPro:WH2_dom |
| EnsemblPlantsGene:Zm00001d028803 | EnsemblPlants:Zm00001d028803_P002 | EnsemblPlants:Zm00001d028803_T002 | SEG:seg | : | : |
Description
Protein SCAR2
Coordinates
chr1:-:46852702..46858687
Molecular Weight (calculated)
131330.0 Da
IEP (calculated)
4.481
GRAVY (calculated)
-0.692
Length
1193 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLSRHTVRS EYALGGRDLY RGADQHDPEA VLDGAAMAGL VGVLRQLGDL AEFAAQVFHG LYDEVMSTSA RGHGLMLRVQ QLEAELPLLE EDSCQRNYLH
0101: VVASNRGVDW HPNPRVDHGV VAGGDTPRFI MESVKQCRGP PKLFVLDKYD VGGDGACLKR YTDPSSFRTG SACPTTLLQE GTRDDRRPLR AVEISPNLQN
0201: AEIFRSPNAA DNFSKLETGS SAGALDEVPT NRRRLKFRQL NGSVFQSFRP LMQNLHEKPS SEERLITGDH SKVHVFMVES PEPGAEERDV MVDTSDNMEK
0301: GKLTVRRKRS VSEEALSRSS DARSAGSSRG GYDSELDIYV DALTTMDSED FSAPESGARE QATEEEEEEQ RCNGSVTSAV SNGTRDITKK TKEVKENSKK
0401: IASKRSKYVG SMELTASKVG ILPRELSEKH APFSGSLRYM AKQLLELRYD GTQDSELYDV EADGVGRDVK YQEISDHAVE AKESDAVHKI LSGSPYDDAG
0501: LGKCPQEEIN HGQEHDVPPT DSPHDSAPDE GNGFQDSNMA YLVGIITSSS SQEGEGCTST ALHENSSMAV LNHVLEHAQE RFGEDLDKEV DVDIHTEAIS
0601: ENTSDKCEDL KEVSIYTEQV NVEDMEEINE SDVYALDDER AEYIEQQVVS DGSISSPVSS KQSDDPCWIT PLTLADEDDT VACKVVDRPE GDHVILSETF
0701: KGIDLPNVVT ESVINSKHDM PNNGQYYLHP KATFGQDLCL GSYKIVGENG EVPLCSSTTA TTTPELTVNT ETKHEFHQAV YQEPSNSFNS SAEVFGDPLA
0801: PDSRDDAPSV ISSFDWMLNG ATQKSFNIFP SHPTNGNAEE NGSSEDVPPL PPLPPMQWRT NKIQTGPSPL SAKIGRPPRP KPSVKQQQSE ASHVLQENSL
0901: HKGLSLQNEL VQANISSDHE KNQILNIDFR ESHHQEGEEY DAQDSNPFAS SEVECLAEVA SVKSENLHPL QLPELIVVLE EAWSEFGNIK FMPEQEGKFQ
1001: LSNGLSVWND LCTSGLSSQK TSEKPEFFAD YKGKEFSFAG SDEVADSEEN KPNGAVKHLQ NPDLPAQQKD DIHDCDGKVT KFSSALEEDS SQSPTHTVSG
1101: PPRYPLLPVT SHDRSMIRKA PTLVQPSSML ADEKNTLLEQ IKNKSFNLKP VLAKRPDVMG GPKTNLQVVA ILERAHAIRQ AVADDDDDDN WSE
0101: VVASNRGVDW HPNPRVDHGV VAGGDTPRFI MESVKQCRGP PKLFVLDKYD VGGDGACLKR YTDPSSFRTG SACPTTLLQE GTRDDRRPLR AVEISPNLQN
0201: AEIFRSPNAA DNFSKLETGS SAGALDEVPT NRRRLKFRQL NGSVFQSFRP LMQNLHEKPS SEERLITGDH SKVHVFMVES PEPGAEERDV MVDTSDNMEK
0301: GKLTVRRKRS VSEEALSRSS DARSAGSSRG GYDSELDIYV DALTTMDSED FSAPESGARE QATEEEEEEQ RCNGSVTSAV SNGTRDITKK TKEVKENSKK
0401: IASKRSKYVG SMELTASKVG ILPRELSEKH APFSGSLRYM AKQLLELRYD GTQDSELYDV EADGVGRDVK YQEISDHAVE AKESDAVHKI LSGSPYDDAG
0501: LGKCPQEEIN HGQEHDVPPT DSPHDSAPDE GNGFQDSNMA YLVGIITSSS SQEGEGCTST ALHENSSMAV LNHVLEHAQE RFGEDLDKEV DVDIHTEAIS
0601: ENTSDKCEDL KEVSIYTEQV NVEDMEEINE SDVYALDDER AEYIEQQVVS DGSISSPVSS KQSDDPCWIT PLTLADEDDT VACKVVDRPE GDHVILSETF
0701: KGIDLPNVVT ESVINSKHDM PNNGQYYLHP KATFGQDLCL GSYKIVGENG EVPLCSSTTA TTTPELTVNT ETKHEFHQAV YQEPSNSFNS SAEVFGDPLA
0801: PDSRDDAPSV ISSFDWMLNG ATQKSFNIFP SHPTNGNAEE NGSSEDVPPL PPLPPMQWRT NKIQTGPSPL SAKIGRPPRP KPSVKQQQSE ASHVLQENSL
0901: HKGLSLQNEL VQANISSDHE KNQILNIDFR ESHHQEGEEY DAQDSNPFAS SEVECLAEVA SVKSENLHPL QLPELIVVLE EAWSEFGNIK FMPEQEGKFQ
1001: LSNGLSVWND LCTSGLSSQK TSEKPEFFAD YKGKEFSFAG SDEVADSEEN KPNGAVKHLQ NPDLPAQQKD DIHDCDGKVT KFSSALEEDS SQSPTHTVSG
1101: PPRYPLLPVT SHDRSMIRKA PTLVQPSSML ADEKNTLLEQ IKNKSFNLKP VLAKRPDVMG GPKTNLQVVA ILERAHAIRQ AVADDDDDDN WSE
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.