Factsheet for Zm00001d035534_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007384_P003
Zm00001d008906_P003
Zm00001d012342_P001
Zm00001d015036_P005
Zm00001d018004_P002
Zm00001d024153_P001
Zm00001d025835_P001
Zm00001d025836_P001
Zm00001d028803_P002
Zm00001d029004_P004
Zm00001d032131_P001
Zm00001d035534_P003
Zm00001d035539_P001
Zm00001d038664_P001
Zm00001d042645_P001
Zm00001d044802_P001
Zm00001d046856_P002
Zm00001d047540_P001
Zm00001d047701_P002
Zm00001d052273_P004
Zm00001d053899_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16340.1	Zm00001d015036_P005	AT1G20090.1	17267444
AT4G16340.1	Zm00001d053899_P001	AT1G20090.1	17267444
AT4G16340.1	Zm00001d008906_P003	AT1G29170.1	17267444
AT4G16340.1	Zm00001d025835_P001	AT1G29170.1	17267444
AT4G16340.1	Zm00001d025836_P001	AT1G29170.1	17267444
AT4G16340.1	Zm00001d032131_P001	AT1G29170.1	17267444
AT4G16340.1	Zm00001d028803_P002	AT2G38440.1	17267444
AT4G16340.1	Zm00001d047701_P002	AT2G38440.1	17267444
AT4G16340.1	Zm00001d007384_P003	AT4G16340.1	17267444
AT4G16340.1	Zm00001d012342_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d024153_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d029004_P004	AT4G16340.1	17267444
AT4G16340.1	Zm00001d035534_P003	AT4G16340.1	17267444
AT4G16340.1	Zm00001d035539_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d038664_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d042645_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d046856_P002	AT4G16340.1	17267444
AT4G16340.1	Zm00001d047540_P001	AT4G16340.1	17267444
AT4G16340.1	Zm00001d028803_P002	AT5G01730.1	17267444
AT4G16340.1	Zm00001d047701_P002	AT5G01730.1	17267444
AT4G16340.1	Zm00001d018004_P002	AT5G62880.1	17267444
AT4G16340.1	Zm00001d044802_P001	AT5G62880.1	17267444
AT4G16340.1	Zm00001d052273_P004	AT5G62880.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046856_P002	Maize	endoplasmic reticulum, nucleus, peroxisome	91.97	81.61
Zm00001d007384_P003	Maize	cytosol, endoplasmic reticulum, peroxisome	45.24	59.78
Zm00001d038664_P001	Maize	cytosol, nucleus, plastid	64.06	56.64
Zm00001d035539_P001	Maize	cytosol	15.86	36.59
Solyc08g016070.1.1	Tomato	mitochondrion	19.87	15.31
Zm00001d042645_P001	Maize	cytosol, nucleus, peroxisome	17.12	13.8
Zm00001d024153_P001	Maize	cytosol	3.38	10.53
TraesCS5D01G127700.1	Wheat	cytosol	2.75	9.09
TraesCS5A01G195400.1	Wheat	cytosol	2.54	8.82
Zm00001d047540_P001	Maize	cytosol, mitochondrion	33.62	8.61
Zm00001d029004_P004	Maize	cytosol	32.35	8.2
VIT_11s0016g00100.t01	Wine grape	mitochondrion	28.54	7.31
AT4G16340.1	Thale cress	cytosol	28.12	7.27
CDY32235	Canola	cytosol	27.91	7.24
KRH13046	Soybean	endoplasmic reticulum	27.48	7.08
KRH43411	Soybean	endoplasmic reticulum	27.27	7.03
Zm00001d012342_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	3.38	6.9
CDY34451	Canola	endoplasmic reticulum	27.48	6.89
Bra038448.1-P	Field mustard	cytosol	28.54	6.52
Solyc08g016050.2.1	Tomato	nucleus	6.55	3.42
Solyc08g016060.1.1	Tomato	extracellular	1.9	3.16

Protein Annotations

MapMan:15.5.53.2	Gene3D:2.130.10.10	Gene3D:3.30.230.70	UniProt:A0A1D6LH23	ProteinID:AQK79184.1	InterPro:Coatomer_WD-assoc_reg
InterPro:ExoRNase_PH_dom1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004527	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016192	GO:GO:0016787	GO:GO:0030117	GO:GO:0090305	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR027408	PFAM:PF01138	PFAM:PF04053	InterPro:PNPase/RNase_PH_dom_sf
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44376	PANTHER:PTHR44376:SF4	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00320
SUPFAM:SSF50978	SUPFAM:SSF54211	UniParc:UPI0008446BFF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d035534	EnsemblPlants:Zm00001d035534_P003	EnsemblPlants:Zm00001d035534_T003	:	:

Description

Exosome complex exonuclease RRP46 homolog

Coordinates

chr6:+:31463453..31467628

Molecular Weight (calculated)

52290.9 Da

IEP (calculated)

8.693

GRAVY (calculated)

-0.209

Length

473 amino acids

Sequence
(BLAST)

001: MMEGGSRADG QNPNQLRLFT CTGNLLHRAH GCARWAQGGI VVLATVYGPK PGTVRGRTPE KASIEAVWKP RTGQIDTPLF PSSSFCPTAV RVTGSLKWRV
101: VFVGRQDREY EMTLKRTLQS ICLLTVHANA TTSVVLQVMF AWLVATMLLL IYFCCSINSS TIDVGCVRDR REKLSEDFYF HILPTDMQDA QGSLDRRSVF
201: SLDTHSPSVC LLIQLEKAAT EEGGVTPSVY SHKEPVHLAE KEKQKLRVWS RIMPCKESFA WAMIPLFEAA ESNDWMSPGY ANAGSSPVPT PPSGKGLKAS
301: TKPKATKGQK SGPQTPLGFG LLTKFLNLLK GAPGGIVDLN NAAETLETPV VKRLICSCDG DNEIRFWSIK HGNDVRIFKG GSTQLRFQPR YGGLLATASD
401: NVVSILDVER QAFVRRFESH TKGVDSVCWD PTGEYVVSVS EDTVKVWSLN DESFMNELSC GGRKLSRYYM FQM

Best Arabidopsis Sequence Match ( AT4G16340.1 )
(BLAST)

0001: MENNNLGLRF RKLPRQPLAL PKLDPLLDEN LEQWPHLNQL VQCYGTEWVK DVNKYGHYEN IRPDSFQTQI FEGPDTDTET EIRLASARSA TIEEDVASIS
0101: GRPFSDPGSS KHFGQPPLPA YEPAFDWENE RAMIFGQRTP ESPAASYSSG LKISVRVLSL AFQSGLVEPF FGSIALYNQE RKEKLSEDFY FQIQPTEMQD
0201: AKLSSENRGV FYLDAPSASV CLLIQLEKTA TEEGGVTSSV YSRKEPVHLT EREKQKLQVW SRIMPYRESF AWAVVPLFDN NLTTNTGESA SPSSPLAPSM
0301: TASSSHDGVY EPIAKITSDG KQGYSGGSSV VVEISNLNKV KESYSEESIQ DPKRKVHKPV KGVLRLEIEK HRNGHGDFED LSENGSIIND SLDPTDRLSD
0401: LTLMKCPSSS SGGPRNGCSK WNSEDAKDVS RNLTSSCGTP DLNCYHAFDF CSTTRNEPFL HLFHCLYVYP VAVTLSRKRN PFIRVELRKD DTDIRKQPLE
0501: AIYPREPGVS LQKWVHTQVA VGARAASYHD EIKVSLPATW TPSHHLLFTF FHVDLQTKLE APRPVVVGYA SLPLSTYIHS RSDISLPVMR ELVPHYLQES
0601: TKERLDYLED GKNIFKLRLR LCSSLYPTNE RVRDFCLEYD RHTLQTRPPW GSELLQAINS LKHVDSTALL QFLYPILNML LHLIGNGGET LQVAAFRAMV
0701: DILTRVQQVS FDDADRNRFL VTYVDYSFDD FGGNQPPVYP GLATVWGSLA RSKAKGYRVG PVYDDVLSMA WFFLELIVKS MALEQARLYD HNLPTGEDVP
0801: PMQLKESVFR CIMQLFDCLL TEVHERCKKG LSLAKRLNSS LAFFCYDLLY IIEPCQVYEL VSLYMDKFSG VCQSVLHECK LTFLQIISDH DLFVEMPGRD
0901: PSDRNYLSSI LIQELFLSLD HDELPLRAKG ARILVILLCK HEFDARYQKA EDKLYIAQLY FPFVGQILDE MPVFYNLNAT EKREVLIGVL QIVRNLDDTS
1001: LVKAWQQSIA RTRLYFKLME ECLILFEHKK AADSILGGNN SRGPVSEGAG SPKYSERLSP AINNYLSEAS RQEVRLEGTP DNGYLWQRVN SQLASPSQPY
1101: SLREALAQAQ SSRIGASAQA LRESLHPILR QKLELWEENV SATVSLQVLE ITENFSSMAA SHNIATDYGK LDCITTILTS FFSRNQSLAF WKAFFPIFNR
1201: IFDLHGATLM ARENDRFLKQ IAFHLLRLAV YRNDSVRKRA VIGLQILVKS SLYFMQTARL RALLTITLSE LMSDVQVTHM KSDNTLEESG EARRLQQSLS
1301: EMADEAKSVN LLRECGLPDD TLLIIPEKFT ENRWSWAEVK HLSDSLVLAL DASLGHALLG SVMAMDRYAA AESFYKLGMA FAPVPDLHIM WLLHLCDAHQ
1401: EMQSWAEAAQ CAVAVAGVIM QALVARNDGV WSKDHVSALR KICPMVSGEF TTEASAAEVE GYGASKLTVD SAVKYLQLAN KLFSQAELYH FCASILELVI
1501: PVYKSRKAYG QLAKCHTLLT NIYESILDQE SNPIPFIDAT YYRVGFYGEK FGKLDRKEYV YREPRDVRLG DIMEKLSHIY ESRMDSNHIL HIIPDSRQVK
1601: AEDLQAGVCY LQITAVDAVM EDEDLGSRRE RIFSLSTGSV RARVFDRFLF DTPFTKNGKT QGGLEDQWKR RTVLQTEGSF PALVNRLLVT KSESLEFSPV
1701: ENAIGMIETR TTALRNELEE PRSSDGDHLP RLQSLQRILQ GSVAVQVNSG VLSVCTAFLS GEPATRLRSQ ELQQLIAALL EFMAVCKRAI RVHFRLIGEE
1801: DQEFHTQLVN GFQSLTAELS HYIPAILSEL

Arabidopsis Description

SPK1Guanine nucleotide exchange factor SPIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8SAB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.