Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0328000-01 | Rice | plasma membrane | 26.49 | 85.41 |
| GSMUA_Achr10P... | Banana | extracellular | 82.34 | 70.31 |
| KRH13046 | Soybean | endoplasmic reticulum | 86.64 | 42.78 |
| KRH43411 | Soybean | endoplasmic reticulum | 86.53 | 42.72 |
| VIT_11s0016g00100.t01 | Wine grape | mitochondrion | 86.87 | 42.61 |
| CDY32235 | Canola | cytosol | 83.11 | 41.28 |
| AT4G16340.1 | Thale cress | cytosol | 83.22 | 41.2 |
| KXG39465 | Sorghum | cytosol | 82.12 | 40.46 |
| HORVU4Hr1G051250.3 | Barley | cytosol | 81.13 | 40.08 |
| TraesCS4A01G131100.1 | Wheat | cytosol | 81.02 | 40.0 |
| TraesCS4D01G175600.4 | Wheat | cytosol | 80.91 | 39.95 |
| TraesCS4B01G173500.4 | Wheat | cytosol | 80.91 | 39.95 |
| Zm00001d047540_P001 | Maize | cytosol, mitochondrion | 81.24 | 39.87 |
| Zm00001d029004_P004 | Maize | cytosol | 81.9 | 39.79 |
| CDY34451 | Canola | endoplasmic reticulum | 82.67 | 39.67 |
| Bra038448.1-P | Field mustard | cytosol | 83.11 | 36.34 |
| TraesCS5D01G127700.1 | Wheat | cytosol | 1.43 | 9.09 |
| Zm00001d046856_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome | 4.64 | 7.88 |
| Zm00001d035534_P003 | Maize | cytosol | 3.42 | 6.55 |
| TraesCS5A01G195400.1 | Wheat | cytosol | 0.88 | 5.88 |
| Zm00001d038664_P001 | Maize | cytosol, nucleus, plastid | 3.2 | 5.42 |
| Zm00001d024153_P001 | Maize | cytosol | 0.77 | 4.61 |
| Solyc08g016060.1.1 | Tomato | extracellular | 1.1 | 3.51 |
| Zm00001d012342_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 0.77 | 3.02 |
| Zm00001d007384_P003 | Maize | cytosol, endoplasmic reticulum, peroxisome | 1.1 | 2.79 |
| GSMUA_Achr10P... | Banana | cytosol | 2.32 | 2.6 |
| Zm00001d042645_P001 | Maize | cytosol, nucleus, peroxisome | 0.77 | 1.19 |
| Solyc08g016070.1.1 | Tomato | mitochondrion | 0.66 | 0.98 |
| Zm00001d035539_P001 | Maize | cytosol | 0.22 | 0.98 |
Protein Annotations
| Gene3D:1.20.58.740 | Gene3D:1.25.40.410 | MapMan:27.4.3.2 | InterPro:DHR-2 | InterPro:DOCK | InterPro:DOCK_C |
| GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0065009 | InterPro:IPR027357 | UniProt:K4CJD0 | PFAM:PF06920 | PFscan:PS51651 | PANTHER:PTHR23317 |
| PANTHER:PTHR23317:SF76 | EnsemblPlantsGene:Solyc08g016050.2 | EnsemblPlants:Solyc08g016050.2.1 | UniParc:UPI000276B6A2 | SEG:seg | : |
Description
No Description!
Coordinates
chr8:-:6609100..6627118
Molecular Weight (calculated)
102056.0 Da
IEP (calculated)
5.757
GRAVY (calculated)
-0.042
Length
906 amino acids
Sequence
(BLAST)
(BLAST)
001: MLYIFIYHAI FLEDRLDISK LSACGNYLSS ILIQEIFLTW DHDDLSMRAK AARILVVLMC KHEFDIRYQK LEDKLYIAQL YFPLVGQILD EMPVFYNLST
101: IEKREVLIIF LQIVRNLDDE TLVKAWEQSI ARTRLFFKLL EECLMHFEHR KPADGMLVGS SSRSVIGEGP ASPKYSDRLS PAINQYMSEA ARQEVRGTPD
201: NGYLWQRVNS QLSSPSQPYS LREALAQAQS SRIGASALAL RESLHPILRQ KLELWEENLS AAVSLQVLEV SEKFSRTAAT KRIATDYGKL DCITSIFMNV
301: FSRNQPLSFW KALFPVFNSV FELHGATLMA RENDRFLKQI AFHLLRLAVF RNDNVRRRAV IGLQILIRSS FSYFMQTGRL RVMLTITLSE LMSEVQVTQM
401: KPDGTLEESG EARRLRNSLE EMADEAKSSS LLLESGLPQN ALAAVPEGSE ENLWSWSEVK FLSESLLMAL DASLEHALLG SVMNVDRYAA AESFYKLAMA
501: FAPVPDLHIM WLLHLCEAHQ EMQSWAEAAQ CAVAVAGVVM QALVCRNDGV WSKDHVSALR KICPMVSSDI TSEASAAEVE GYGASKLTVD SAVKYLQLAN
601: KLFHQAELFH FCASILELVI PVNKSRKAYG QLAKCHTTLT NIYESILEQE SSPIPFTDSI MDGTTLHVIP DSRQVKADEL QPGVCYLQIT AVDPVMEDED
701: LGSRRERIFS LSTGSVRARV FDRFLFDTPF TKNGKTQGGL EDQWKRRTVL QTEGSFPALV NRLLVIKCES LEFSPVENAI GMIETRTAAL RNELEEPRSS
801: EGDQLPRLQS LQRILQGSVA VQVNSGVLSV CTAFLSGEPA TRLRSQELQQ LIAALLEFMA VCKRAIRVHF RLIGEEDQDF HTQLVNGFQS LTAELSHYIP
901: AILSEL
101: IEKREVLIIF LQIVRNLDDE TLVKAWEQSI ARTRLFFKLL EECLMHFEHR KPADGMLVGS SSRSVIGEGP ASPKYSDRLS PAINQYMSEA ARQEVRGTPD
201: NGYLWQRVNS QLSSPSQPYS LREALAQAQS SRIGASALAL RESLHPILRQ KLELWEENLS AAVSLQVLEV SEKFSRTAAT KRIATDYGKL DCITSIFMNV
301: FSRNQPLSFW KALFPVFNSV FELHGATLMA RENDRFLKQI AFHLLRLAVF RNDNVRRRAV IGLQILIRSS FSYFMQTGRL RVMLTITLSE LMSEVQVTQM
401: KPDGTLEESG EARRLRNSLE EMADEAKSSS LLLESGLPQN ALAAVPEGSE ENLWSWSEVK FLSESLLMAL DASLEHALLG SVMNVDRYAA AESFYKLAMA
501: FAPVPDLHIM WLLHLCEAHQ EMQSWAEAAQ CAVAVAGVVM QALVCRNDGV WSKDHVSALR KICPMVSSDI TSEASAAEVE GYGASKLTVD SAVKYLQLAN
601: KLFHQAELFH FCASILELVI PVNKSRKAYG QLAKCHTTLT NIYESILEQE SSPIPFTDSI MDGTTLHVIP DSRQVKADEL QPGVCYLQIT AVDPVMEDED
701: LGSRRERIFS LSTGSVRARV FDRFLFDTPF TKNGKTQGGL EDQWKRRTVL QTEGSFPALV NRLLVIKCES LEFSPVENAI GMIETRTAAL RNELEEPRSS
801: EGDQLPRLQS LQRILQGSVA VQVNSGVLSV CTAFLSGEPA TRLRSQELQQ LIAALLEFMA VCKRAIRVHF RLIGEEDQDF HTQLVNGFQS LTAELSHYIP
901: AILSEL
0001: MENNNLGLRF RKLPRQPLAL PKLDPLLDEN LEQWPHLNQL VQCYGTEWVK DVNKYGHYEN IRPDSFQTQI FEGPDTDTET EIRLASARSA TIEEDVASIS
0101: GRPFSDPGSS KHFGQPPLPA YEPAFDWENE RAMIFGQRTP ESPAASYSSG LKISVRVLSL AFQSGLVEPF FGSIALYNQE RKEKLSEDFY FQIQPTEMQD
0201: AKLSSENRGV FYLDAPSASV CLLIQLEKTA TEEGGVTSSV YSRKEPVHLT EREKQKLQVW SRIMPYRESF AWAVVPLFDN NLTTNTGESA SPSSPLAPSM
0301: TASSSHDGVY EPIAKITSDG KQGYSGGSSV VVEISNLNKV KESYSEESIQ DPKRKVHKPV KGVLRLEIEK HRNGHGDFED LSENGSIIND SLDPTDRLSD
0401: LTLMKCPSSS SGGPRNGCSK WNSEDAKDVS RNLTSSCGTP DLNCYHAFDF CSTTRNEPFL HLFHCLYVYP VAVTLSRKRN PFIRVELRKD DTDIRKQPLE
0501: AIYPREPGVS LQKWVHTQVA VGARAASYHD EIKVSLPATW TPSHHLLFTF FHVDLQTKLE APRPVVVGYA SLPLSTYIHS RSDISLPVMR ELVPHYLQES
0601: TKERLDYLED GKNIFKLRLR LCSSLYPTNE RVRDFCLEYD RHTLQTRPPW GSELLQAINS LKHVDSTALL QFLYPILNML LHLIGNGGET LQVAAFRAMV
0701: DILTRVQQVS FDDADRNRFL VTYVDYSFDD FGGNQPPVYP GLATVWGSLA RSKAKGYRVG PVYDDVLSMA WFFLELIVKS MALEQARLYD HNLPTGEDVP
0801: PMQLKESVFR CIMQLFDCLL TEVHERCKKG LSLAKRLNSS LAFFCYDLLY IIEPCQVYEL VSLYMDKFSG VCQSVLHECK LTFLQIISDH DLFVEMPGRD
0901: PSDRNYLSSI LIQELFLSLD HDELPLRAKG ARILVILLCK HEFDARYQKA EDKLYIAQLY FPFVGQILDE MPVFYNLNAT EKREVLIGVL QIVRNLDDTS
1001: LVKAWQQSIA RTRLYFKLME ECLILFEHKK AADSILGGNN SRGPVSEGAG SPKYSERLSP AINNYLSEAS RQEVRLEGTP DNGYLWQRVN SQLASPSQPY
1101: SLREALAQAQ SSRIGASAQA LRESLHPILR QKLELWEENV SATVSLQVLE ITENFSSMAA SHNIATDYGK LDCITTILTS FFSRNQSLAF WKAFFPIFNR
1201: IFDLHGATLM ARENDRFLKQ IAFHLLRLAV YRNDSVRKRA VIGLQILVKS SLYFMQTARL RALLTITLSE LMSDVQVTHM KSDNTLEESG EARRLQQSLS
1301: EMADEAKSVN LLRECGLPDD TLLIIPEKFT ENRWSWAEVK HLSDSLVLAL DASLGHALLG SVMAMDRYAA AESFYKLGMA FAPVPDLHIM WLLHLCDAHQ
1401: EMQSWAEAAQ CAVAVAGVIM QALVARNDGV WSKDHVSALR KICPMVSGEF TTEASAAEVE GYGASKLTVD SAVKYLQLAN KLFSQAELYH FCASILELVI
1501: PVYKSRKAYG QLAKCHTLLT NIYESILDQE SNPIPFIDAT YYRVGFYGEK FGKLDRKEYV YREPRDVRLG DIMEKLSHIY ESRMDSNHIL HIIPDSRQVK
1601: AEDLQAGVCY LQITAVDAVM EDEDLGSRRE RIFSLSTGSV RARVFDRFLF DTPFTKNGKT QGGLEDQWKR RTVLQTEGSF PALVNRLLVT KSESLEFSPV
1701: ENAIGMIETR TTALRNELEE PRSSDGDHLP RLQSLQRILQ GSVAVQVNSG VLSVCTAFLS GEPATRLRSQ ELQQLIAALL EFMAVCKRAI RVHFRLIGEE
1801: DQEFHTQLVN GFQSLTAELS HYIPAILSEL
0101: GRPFSDPGSS KHFGQPPLPA YEPAFDWENE RAMIFGQRTP ESPAASYSSG LKISVRVLSL AFQSGLVEPF FGSIALYNQE RKEKLSEDFY FQIQPTEMQD
0201: AKLSSENRGV FYLDAPSASV CLLIQLEKTA TEEGGVTSSV YSRKEPVHLT EREKQKLQVW SRIMPYRESF AWAVVPLFDN NLTTNTGESA SPSSPLAPSM
0301: TASSSHDGVY EPIAKITSDG KQGYSGGSSV VVEISNLNKV KESYSEESIQ DPKRKVHKPV KGVLRLEIEK HRNGHGDFED LSENGSIIND SLDPTDRLSD
0401: LTLMKCPSSS SGGPRNGCSK WNSEDAKDVS RNLTSSCGTP DLNCYHAFDF CSTTRNEPFL HLFHCLYVYP VAVTLSRKRN PFIRVELRKD DTDIRKQPLE
0501: AIYPREPGVS LQKWVHTQVA VGARAASYHD EIKVSLPATW TPSHHLLFTF FHVDLQTKLE APRPVVVGYA SLPLSTYIHS RSDISLPVMR ELVPHYLQES
0601: TKERLDYLED GKNIFKLRLR LCSSLYPTNE RVRDFCLEYD RHTLQTRPPW GSELLQAINS LKHVDSTALL QFLYPILNML LHLIGNGGET LQVAAFRAMV
0701: DILTRVQQVS FDDADRNRFL VTYVDYSFDD FGGNQPPVYP GLATVWGSLA RSKAKGYRVG PVYDDVLSMA WFFLELIVKS MALEQARLYD HNLPTGEDVP
0801: PMQLKESVFR CIMQLFDCLL TEVHERCKKG LSLAKRLNSS LAFFCYDLLY IIEPCQVYEL VSLYMDKFSG VCQSVLHECK LTFLQIISDH DLFVEMPGRD
0901: PSDRNYLSSI LIQELFLSLD HDELPLRAKG ARILVILLCK HEFDARYQKA EDKLYIAQLY FPFVGQILDE MPVFYNLNAT EKREVLIGVL QIVRNLDDTS
1001: LVKAWQQSIA RTRLYFKLME ECLILFEHKK AADSILGGNN SRGPVSEGAG SPKYSERLSP AINNYLSEAS RQEVRLEGTP DNGYLWQRVN SQLASPSQPY
1101: SLREALAQAQ SSRIGASAQA LRESLHPILR QKLELWEENV SATVSLQVLE ITENFSSMAA SHNIATDYGK LDCITTILTS FFSRNQSLAF WKAFFPIFNR
1201: IFDLHGATLM ARENDRFLKQ IAFHLLRLAV YRNDSVRKRA VIGLQILVKS SLYFMQTARL RALLTITLSE LMSDVQVTHM KSDNTLEESG EARRLQQSLS
1301: EMADEAKSVN LLRECGLPDD TLLIIPEKFT ENRWSWAEVK HLSDSLVLAL DASLGHALLG SVMAMDRYAA AESFYKLGMA FAPVPDLHIM WLLHLCDAHQ
1401: EMQSWAEAAQ CAVAVAGVIM QALVARNDGV WSKDHVSALR KICPMVSGEF TTEASAAEVE GYGASKLTVD SAVKYLQLAN KLFSQAELYH FCASILELVI
1501: PVYKSRKAYG QLAKCHTLLT NIYESILDQE SNPIPFIDAT YYRVGFYGEK FGKLDRKEYV YREPRDVRLG DIMEKLSHIY ESRMDSNHIL HIIPDSRQVK
1601: AEDLQAGVCY LQITAVDAVM EDEDLGSRRE RIFSLSTGSV RARVFDRFLF DTPFTKNGKT QGGLEDQWKR RTVLQTEGSF PALVNRLLVT KSESLEFSPV
1701: ENAIGMIETR TTALRNELEE PRSSDGDHLP RLQSLQRILQ GSVAVQVNSG VLSVCTAFLS GEPATRLRSQ ELQQLIAALL EFMAVCKRAI RVHFRLIGEE
1801: DQEFHTQLVN GFQSLTAELS HYIPAILSEL
Arabidopsis Description
SPK1Guanine nucleotide exchange factor SPIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8SAB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.