Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- endoplasmic reticulum 1
- peroxisome 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035534_P003 | Maize | cytosol | 81.61 | 91.97 |
| Zm00001d007384_P003 | Maize | cytosol, endoplasmic reticulum, peroxisome | 43.71 | 65.08 |
| Zm00001d038664_P001 | Maize | cytosol, nucleus, plastid | 63.79 | 63.55 |
| Zm00001d035539_P001 | Maize | cytosol | 14.26 | 37.07 |
| Solyc08g016070.1.1 | Tomato | mitochondrion | 17.82 | 15.47 |
| Zm00001d042645_P001 | Maize | cytosol, nucleus, peroxisome | 15.57 | 14.14 |
| Zm00001d024153_P001 | Maize | cytosol | 3.0 | 10.53 |
| TraesCS5A01G195400.1 | Wheat | cytosol | 2.63 | 10.29 |
| TraesCS5D01G127700.1 | Wheat | cytosol | 2.63 | 9.79 |
| Zm00001d047540_P001 | Maize | cytosol, mitochondrion | 32.27 | 9.32 |
| Zm00001d029004_P004 | Maize | cytosol | 31.14 | 8.9 |
| CDY32235 | Canola | cytosol | 27.39 | 8.0 |
| AT4G16340.1 | Thale cress | cytosol | 27.39 | 7.98 |
| VIT_11s0016g00100.t01 | Wine grape | mitochondrion | 27.58 | 7.96 |
| KRH43411 | Soybean | endoplasmic reticulum | 26.45 | 7.68 |
| KRH13046 | Soybean | endoplasmic reticulum | 26.45 | 7.68 |
| CDY34451 | Canola | endoplasmic reticulum | 26.83 | 7.57 |
| Bra038448.1-P | Field mustard | cytosol | 27.95 | 7.19 |
| Zm00001d012342_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 3.0 | 6.9 |
| Solyc08g016050.2.1 | Tomato | nucleus | 7.88 | 4.64 |
| Solyc08g016060.1.1 | Tomato | extracellular | 2.25 | 4.21 |
Protein Annotations
Description
Exosome complex exonuclease RRP46 homolog
Coordinates
chr9:-:108419897..108424080
Molecular Weight (calculated)
58568.3 Da
IEP (calculated)
8.314
GRAVY (calculated)
-0.224
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEGGSRADG QNPNQLRLFT CTGNLLHRAH GCARWAQGGI VVLAAVYGPK PGTVRGRTPE KASIEAVWKP RTGQIDTPLF PSSSFCPTAV RVTGSLKWRV
101: VFAGRQEREY EMTLKRTLQS ICLLTVHANT TTSVVLQVMF AWLVATMLLL IYFCCSINSS TIVVGCVRDR REKLSEDFYF HILPTDMQDA QGSLDRRSVF
201: SLDTHSPSVC LLIQLEKAAT EEGGVTPSVY SHKEPVHLAE KEKQKLQVWS RIMPCKESFA WAMIPLFEAA ESNDWMSPGY ANAGSSPVPT PPSGKGLKAS
301: TKPKATEGQK SGPQTPLGFG SPGNPSTPIG GCRYDSSLGL LTKVLNLLKG APGGIVDLNN AAETLEDITN VLEGIGLIEK KLKNNIRWKG VDDSRPGEVS
401: DDMSILQTPV VKRLICSCDG DNEIRFWSIK HGNAVRIFKG GSTQLRFQPR YGGLLATASD NVVSILDVER QAFVRRFESH TKGVDSVCWD PTGEYVVSVS
501: EDTVKVWSLN DESFMNELSC GGRKLSRYYM FQM
101: VFAGRQEREY EMTLKRTLQS ICLLTVHANT TTSVVLQVMF AWLVATMLLL IYFCCSINSS TIVVGCVRDR REKLSEDFYF HILPTDMQDA QGSLDRRSVF
201: SLDTHSPSVC LLIQLEKAAT EEGGVTPSVY SHKEPVHLAE KEKQKLQVWS RIMPCKESFA WAMIPLFEAA ESNDWMSPGY ANAGSSPVPT PPSGKGLKAS
301: TKPKATEGQK SGPQTPLGFG SPGNPSTPIG GCRYDSSLGL LTKVLNLLKG APGGIVDLNN AAETLEDITN VLEGIGLIEK KLKNNIRWKG VDDSRPGEVS
401: DDMSILQTPV VKRLICSCDG DNEIRFWSIK HGNAVRIFKG GSTQLRFQPR YGGLLATASD NVVSILDVER QAFVRRFESH TKGVDSVCWD PTGEYVVSVS
501: EDTVKVWSLN DESFMNELSC GGRKLSRYYM FQM
0001: MENNNLGLRF RKLPRQPLAL PKLDPLLDEN LEQWPHLNQL VQCYGTEWVK DVNKYGHYEN IRPDSFQTQI FEGPDTDTET EIRLASARSA TIEEDVASIS
0101: GRPFSDPGSS KHFGQPPLPA YEPAFDWENE RAMIFGQRTP ESPAASYSSG LKISVRVLSL AFQSGLVEPF FGSIALYNQE RKEKLSEDFY FQIQPTEMQD
0201: AKLSSENRGV FYLDAPSASV CLLIQLEKTA TEEGGVTSSV YSRKEPVHLT EREKQKLQVW SRIMPYRESF AWAVVPLFDN NLTTNTGESA SPSSPLAPSM
0301: TASSSHDGVY EPIAKITSDG KQGYSGGSSV VVEISNLNKV KESYSEESIQ DPKRKVHKPV KGVLRLEIEK HRNGHGDFED LSENGSIIND SLDPTDRLSD
0401: LTLMKCPSSS SGGPRNGCSK WNSEDAKDVS RNLTSSCGTP DLNCYHAFDF CSTTRNEPFL HLFHCLYVYP VAVTLSRKRN PFIRVELRKD DTDIRKQPLE
0501: AIYPREPGVS LQKWVHTQVA VGARAASYHD EIKVSLPATW TPSHHLLFTF FHVDLQTKLE APRPVVVGYA SLPLSTYIHS RSDISLPVMR ELVPHYLQES
0601: TKERLDYLED GKNIFKLRLR LCSSLYPTNE RVRDFCLEYD RHTLQTRPPW GSELLQAINS LKHVDSTALL QFLYPILNML LHLIGNGGET LQVAAFRAMV
0701: DILTRVQQVS FDDADRNRFL VTYVDYSFDD FGGNQPPVYP GLATVWGSLA RSKAKGYRVG PVYDDVLSMA WFFLELIVKS MALEQARLYD HNLPTGEDVP
0801: PMQLKESVFR CIMQLFDCLL TEVHERCKKG LSLAKRLNSS LAFFCYDLLY IIEPCQVYEL VSLYMDKFSG VCQSVLHECK LTFLQIISDH DLFVEMPGRD
0901: PSDRNYLSSI LIQELFLSLD HDELPLRAKG ARILVILLCK HEFDARYQKA EDKLYIAQLY FPFVGQILDE MPVFYNLNAT EKREVLIGVL QIVRNLDDTS
1001: LVKAWQQSIA RTRLYFKLME ECLILFEHKK AADSILGGNN SRGPVSEGAG SPKYSERLSP AINNYLSEAS RQEVRLEGTP DNGYLWQRVN SQLASPSQPY
1101: SLREALAQAQ SSRIGASAQA LRESLHPILR QKLELWEENV SATVSLQVLE ITENFSSMAA SHNIATDYGK LDCITTILTS FFSRNQSLAF WKAFFPIFNR
1201: IFDLHGATLM ARENDRFLKQ IAFHLLRLAV YRNDSVRKRA VIGLQILVKS SLYFMQTARL RALLTITLSE LMSDVQVTHM KSDNTLEESG EARRLQQSLS
1301: EMADEAKSVN LLRECGLPDD TLLIIPEKFT ENRWSWAEVK HLSDSLVLAL DASLGHALLG SVMAMDRYAA AESFYKLGMA FAPVPDLHIM WLLHLCDAHQ
1401: EMQSWAEAAQ CAVAVAGVIM QALVARNDGV WSKDHVSALR KICPMVSGEF TTEASAAEVE GYGASKLTVD SAVKYLQLAN KLFSQAELYH FCASILELVI
1501: PVYKSRKAYG QLAKCHTLLT NIYESILDQE SNPIPFIDAT YYRVGFYGEK FGKLDRKEYV YREPRDVRLG DIMEKLSHIY ESRMDSNHIL HIIPDSRQVK
1601: AEDLQAGVCY LQITAVDAVM EDEDLGSRRE RIFSLSTGSV RARVFDRFLF DTPFTKNGKT QGGLEDQWKR RTVLQTEGSF PALVNRLLVT KSESLEFSPV
1701: ENAIGMIETR TTALRNELEE PRSSDGDHLP RLQSLQRILQ GSVAVQVNSG VLSVCTAFLS GEPATRLRSQ ELQQLIAALL EFMAVCKRAI RVHFRLIGEE
1801: DQEFHTQLVN GFQSLTAELS HYIPAILSEL
0101: GRPFSDPGSS KHFGQPPLPA YEPAFDWENE RAMIFGQRTP ESPAASYSSG LKISVRVLSL AFQSGLVEPF FGSIALYNQE RKEKLSEDFY FQIQPTEMQD
0201: AKLSSENRGV FYLDAPSASV CLLIQLEKTA TEEGGVTSSV YSRKEPVHLT EREKQKLQVW SRIMPYRESF AWAVVPLFDN NLTTNTGESA SPSSPLAPSM
0301: TASSSHDGVY EPIAKITSDG KQGYSGGSSV VVEISNLNKV KESYSEESIQ DPKRKVHKPV KGVLRLEIEK HRNGHGDFED LSENGSIIND SLDPTDRLSD
0401: LTLMKCPSSS SGGPRNGCSK WNSEDAKDVS RNLTSSCGTP DLNCYHAFDF CSTTRNEPFL HLFHCLYVYP VAVTLSRKRN PFIRVELRKD DTDIRKQPLE
0501: AIYPREPGVS LQKWVHTQVA VGARAASYHD EIKVSLPATW TPSHHLLFTF FHVDLQTKLE APRPVVVGYA SLPLSTYIHS RSDISLPVMR ELVPHYLQES
0601: TKERLDYLED GKNIFKLRLR LCSSLYPTNE RVRDFCLEYD RHTLQTRPPW GSELLQAINS LKHVDSTALL QFLYPILNML LHLIGNGGET LQVAAFRAMV
0701: DILTRVQQVS FDDADRNRFL VTYVDYSFDD FGGNQPPVYP GLATVWGSLA RSKAKGYRVG PVYDDVLSMA WFFLELIVKS MALEQARLYD HNLPTGEDVP
0801: PMQLKESVFR CIMQLFDCLL TEVHERCKKG LSLAKRLNSS LAFFCYDLLY IIEPCQVYEL VSLYMDKFSG VCQSVLHECK LTFLQIISDH DLFVEMPGRD
0901: PSDRNYLSSI LIQELFLSLD HDELPLRAKG ARILVILLCK HEFDARYQKA EDKLYIAQLY FPFVGQILDE MPVFYNLNAT EKREVLIGVL QIVRNLDDTS
1001: LVKAWQQSIA RTRLYFKLME ECLILFEHKK AADSILGGNN SRGPVSEGAG SPKYSERLSP AINNYLSEAS RQEVRLEGTP DNGYLWQRVN SQLASPSQPY
1101: SLREALAQAQ SSRIGASAQA LRESLHPILR QKLELWEENV SATVSLQVLE ITENFSSMAA SHNIATDYGK LDCITTILTS FFSRNQSLAF WKAFFPIFNR
1201: IFDLHGATLM ARENDRFLKQ IAFHLLRLAV YRNDSVRKRA VIGLQILVKS SLYFMQTARL RALLTITLSE LMSDVQVTHM KSDNTLEESG EARRLQQSLS
1301: EMADEAKSVN LLRECGLPDD TLLIIPEKFT ENRWSWAEVK HLSDSLVLAL DASLGHALLG SVMAMDRYAA AESFYKLGMA FAPVPDLHIM WLLHLCDAHQ
1401: EMQSWAEAAQ CAVAVAGVIM QALVARNDGV WSKDHVSALR KICPMVSGEF TTEASAAEVE GYGASKLTVD SAVKYLQLAN KLFSQAELYH FCASILELVI
1501: PVYKSRKAYG QLAKCHTLLT NIYESILDQE SNPIPFIDAT YYRVGFYGEK FGKLDRKEYV YREPRDVRLG DIMEKLSHIY ESRMDSNHIL HIIPDSRQVK
1601: AEDLQAGVCY LQITAVDAVM EDEDLGSRRE RIFSLSTGSV RARVFDRFLF DTPFTKNGKT QGGLEDQWKR RTVLQTEGSF PALVNRLLVT KSESLEFSPV
1701: ENAIGMIETR TTALRNELEE PRSSDGDHLP RLQSLQRILQ GSVAVQVNSG VLSVCTAFLS GEPATRLRSQ ELQQLIAALL EFMAVCKRAI RVHFRLIGEE
1801: DQEFHTQLVN GFQSLTAELS HYIPAILSEL
Arabidopsis Description
SPK1Guanine nucleotide exchange factor SPIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8SAB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.