Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13046 | Soybean | endoplasmic reticulum | 97.71 | 97.71 |
| Os03t0328000-01 | Rice | plasma membrane | 14.71 | 96.09 |
| GSMUA_Achr10P... | Banana | extracellular | 50.19 | 86.8 |
| Solyc08g016050.2.1 | Tomato | nucleus | 42.72 | 86.53 |
| VIT_11s0016g00100.t01 | Wine grape | mitochondrion | 86.65 | 86.09 |
| Solyc08g016060.1.1 | Tomato | extracellular | 13.19 | 84.91 |
| CDY32235 | Canola | cytosol | 79.29 | 79.77 |
| AT4G16340.1 | Thale cress | cytosol | 79.4 | 79.62 |
| KXG39465 | Sorghum | cytosol | 77.06 | 76.89 |
| CDY34451 | Canola | endoplasmic reticulum | 78.58 | 76.38 |
| HORVU4Hr1G051250.3 | Barley | cytosol | 76.29 | 76.34 |
| TraesCS4B01G173500.4 | Wheat | cytosol | 76.13 | 76.13 |
| TraesCS4A01G131100.1 | Wheat | cytosol | 76.02 | 76.02 |
| TraesCS4D01G175600.4 | Wheat | cytosol | 76.02 | 76.02 |
| Zm00001d029004_P004 | Maize | cytosol | 76.84 | 75.6 |
| Zm00001d047540_P001 | Maize | cytosol, mitochondrion | 76.02 | 75.57 |
| Bra038448.1-P | Field mustard | cytosol | 79.24 | 70.17 |
| Solyc08g016070.1.1 | Tomato | mitochondrion | 23.0 | 68.73 |
| GSMUA_Achr10P... | Banana | cytosol | 29.1 | 66.09 |
| Zm00001d024153_P001 | Maize | cytosol | 4.9 | 59.21 |
| Zm00001d012342_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 6.65 | 52.59 |
| Zm00001d035539_P001 | Maize | cytosol | 5.61 | 50.24 |
| Zm00001d042645_P001 | Maize | cytosol, nucleus, peroxisome | 12.92 | 40.37 |
| TraesCS5D01G127700.1 | Wheat | cytosol | 2.78 | 35.66 |
| TraesCS5A01G195400.1 | Wheat | cytosol | 2.4 | 32.35 |
| Zm00001d007384_P003 | Maize | cytosol, endoplasmic reticulum, peroxisome | 6.1 | 31.28 |
| Zm00001d035534_P003 | Maize | cytosol | 7.03 | 27.27 |
| Zm00001d046856_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome | 7.68 | 26.45 |
| Zm00001d038664_P001 | Maize | cytosol, nucleus, plastid | 6.81 | 23.36 |
Protein Annotations
| Gene3D:1.20.58.740 | Gene3D:1.25.40.410 | EntrezGene:100803721 | MapMan:27.4.3.2 | EMBL:ACUP02004856 | InterPro:ARM-type_fold |
| ncoils:Coil | InterPro:DHR-1_domain | InterPro:DHR-2 | InterPro:DOCK | InterPro:DOCK_C | EnsemblPlantsGene:GLYMA_08G148300 |
| GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0065009 | InterPro:IPR027007 | InterPro:IPR027357 | UniProt:K7L6S8 | EnsemblPlants:KRH43411 | ProteinID:KRH43411 |
| ProteinID:KRH43411.1 | PFAM:PF06920 | PFAM:PF14429 | PFscan:PS51650 | PFscan:PS51651 | PANTHER:PTHR23317 |
| PANTHER:PTHR23317:SF76 | SUPFAM:SSF48371 | UniParc:UPI0002951929 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr8:-:11311587..11344359
Molecular Weight (calculated)
207841.0 Da
IEP (calculated)
6.083
GRAVY (calculated)
-0.244
Length
1835 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLHLRQRRDA AAPATTRWRN TFEENLEQWP HLNELVHCYT TDWVKDENKY GHYDSVGTPS FHNQIYEGPD TDIETEMRLA GARQTKGDEV NDDDIPSTSG
0101: RQFTEGVDGD LLPSDVPKHI GQSPLPAYEP AFDWENERTL IFGQRIPETP LSHGMKISVK VQSLQFQAGL AEPFYGTICL YNRERREKLS EDFYFHVLPT
0201: ETQNAKITCE PRAVFYLDAP SASVCLLIQL EKHATEEGGV TASVYSRKDP VHLTEREKQK LQVWSKIMPY KESFAWTIVS LFDSSIGAAS VGPASPSSPL
0301: APSISGSSSH EGVFETSAKI SLDGKLSYSN GNSVVVEVSN LNKVKESYTE ESLQDPKRKV HKPVKGVLRL EIEKHQISQA DLENMSESGS ITNDSVDQGD
0401: RIADSLSGKY PSNGCDDPQG SNLRVVSPVL GNGANQHGNS DFNAHDFHAF DFRTTTRNEP FLQLFHCLYV YPLTVSLGRK RNLFLRAELR EDDGDIRRQP
0501: LEAIYPRDPG LDASFQKWGH TQVAVGARVA CYHDEIKLSL PAMWTPTHHL LFTLFHVDLQ TKLEAPKPVV IGYAALPLSS HAQLRSEINL PIMRELVPHY
0601: LQDAGRERLD YLEDGKSVFR LRLRLCSSLY PINERIRDFF LEYDRHTLRT SPPWGSELLE AINSLKNVDS TALLQFLHPI LNMLLHLIGN GGETLQVAAF
0701: RAMVNIVTRV QQESVDDAER NHFLVNYVDC AFDDFGGRQP PVYPGLSTVW GSLARSKAKG YRVGPVYDDV LAMAWFFLEL IVKSMALEKT RLFYHSLPIG
0801: EDIPPMQLKD GVFRCILQLY DCLLTEVHER CKKGLSLAKR LNSSLAFFCY DLLSIIEPRQ IFELVSLYLD KFSGVCQSVL HECKLTFLQI ICDHDLFVEM
0901: PGRDPSDRNY LSSVLIQELF VTLDHEDLSL REKAARILVV LLCKHEFDVR YQKPEDKLYI AQLYFPLVGQ ILDEMPVFYN LNSVEKREVS IVILQIVRNL
1001: DDASLVKAWQ QSIARTRLFF KLMEECLLLF EHKKHADGML LGSSSRNPVG EAPASPKYSD RLSPAINNYL SEASRQEVRP QGTPDNGYLW QRVNSQLSSP
1101: SQPYSLREAL AQAQSSRIGA SAQALRESLH PLLRQKLELW EENLSAFVSL QVLEVTEKFS MMAASHSIAT DYGKLDCITS VFMSFLSRNQ PLTFWKAFFP
1201: VFNSVFDLHG ATLMARENDR FLKQVTFHLL RLAVFRNENI RQRAVVGLQI LVRSSFHYFM QTARLRVMLI ITLSELMSDV QVTQMRSDGS LEESGEARRL
1301: RKSLDEMKDE TKNAYLLKEC GLPENALVIV PEKMTENRWS WSEVKYLSDS LLLALDGSLE HALLAPMMTM DRYAAAESFY KLAMAFAPVP DLHIMWLLHL
1401: CDAHQEMQSW AEAAQCAVAV AGVVMQALVA RNDGVWSKDH VAALRKICPM VSNEITSEAS AAEVEGYGAS KLTVDSAVKY LQLANKLFSQ AELFHFCASI
1501: LELVIPVYKS RRAYGQLAKC HTLLTSIYES ILEQESSPIP FTDATYYRVG FYGDRFGKLD KKEYVYREPR DVRLGDIMEK LSHTYESRMD DNHTLHIIPD
1601: SRQVKAEELQ LGVCYLQITA VDPVMEDEDL GSRRERIFSL STGSVRARVF DRFLFDTPFT KNGKTQGGLE DQWKRRTVLQ TEGSFPALVN RLLVIKSESL
1701: EFSPVENAIG MIETRTAALR NELEEPRSSE GDQLPRLQSL QRILQGSVAV QVNSGVLSVC TAFLSGEPAT RLRSQELQQL IAALLEFMAV CKRAIRVHFR
1801: LIGEEDQDFH TQLVNGFQSL TAELSHYIPA ILSEL
0101: RQFTEGVDGD LLPSDVPKHI GQSPLPAYEP AFDWENERTL IFGQRIPETP LSHGMKISVK VQSLQFQAGL AEPFYGTICL YNRERREKLS EDFYFHVLPT
0201: ETQNAKITCE PRAVFYLDAP SASVCLLIQL EKHATEEGGV TASVYSRKDP VHLTEREKQK LQVWSKIMPY KESFAWTIVS LFDSSIGAAS VGPASPSSPL
0301: APSISGSSSH EGVFETSAKI SLDGKLSYSN GNSVVVEVSN LNKVKESYTE ESLQDPKRKV HKPVKGVLRL EIEKHQISQA DLENMSESGS ITNDSVDQGD
0401: RIADSLSGKY PSNGCDDPQG SNLRVVSPVL GNGANQHGNS DFNAHDFHAF DFRTTTRNEP FLQLFHCLYV YPLTVSLGRK RNLFLRAELR EDDGDIRRQP
0501: LEAIYPRDPG LDASFQKWGH TQVAVGARVA CYHDEIKLSL PAMWTPTHHL LFTLFHVDLQ TKLEAPKPVV IGYAALPLSS HAQLRSEINL PIMRELVPHY
0601: LQDAGRERLD YLEDGKSVFR LRLRLCSSLY PINERIRDFF LEYDRHTLRT SPPWGSELLE AINSLKNVDS TALLQFLHPI LNMLLHLIGN GGETLQVAAF
0701: RAMVNIVTRV QQESVDDAER NHFLVNYVDC AFDDFGGRQP PVYPGLSTVW GSLARSKAKG YRVGPVYDDV LAMAWFFLEL IVKSMALEKT RLFYHSLPIG
0801: EDIPPMQLKD GVFRCILQLY DCLLTEVHER CKKGLSLAKR LNSSLAFFCY DLLSIIEPRQ IFELVSLYLD KFSGVCQSVL HECKLTFLQI ICDHDLFVEM
0901: PGRDPSDRNY LSSVLIQELF VTLDHEDLSL REKAARILVV LLCKHEFDVR YQKPEDKLYI AQLYFPLVGQ ILDEMPVFYN LNSVEKREVS IVILQIVRNL
1001: DDASLVKAWQ QSIARTRLFF KLMEECLLLF EHKKHADGML LGSSSRNPVG EAPASPKYSD RLSPAINNYL SEASRQEVRP QGTPDNGYLW QRVNSQLSSP
1101: SQPYSLREAL AQAQSSRIGA SAQALRESLH PLLRQKLELW EENLSAFVSL QVLEVTEKFS MMAASHSIAT DYGKLDCITS VFMSFLSRNQ PLTFWKAFFP
1201: VFNSVFDLHG ATLMARENDR FLKQVTFHLL RLAVFRNENI RQRAVVGLQI LVRSSFHYFM QTARLRVMLI ITLSELMSDV QVTQMRSDGS LEESGEARRL
1301: RKSLDEMKDE TKNAYLLKEC GLPENALVIV PEKMTENRWS WSEVKYLSDS LLLALDGSLE HALLAPMMTM DRYAAAESFY KLAMAFAPVP DLHIMWLLHL
1401: CDAHQEMQSW AEAAQCAVAV AGVVMQALVA RNDGVWSKDH VAALRKICPM VSNEITSEAS AAEVEGYGAS KLTVDSAVKY LQLANKLFSQ AELFHFCASI
1501: LELVIPVYKS RRAYGQLAKC HTLLTSIYES ILEQESSPIP FTDATYYRVG FYGDRFGKLD KKEYVYREPR DVRLGDIMEK LSHTYESRMD DNHTLHIIPD
1601: SRQVKAEELQ LGVCYLQITA VDPVMEDEDL GSRRERIFSL STGSVRARVF DRFLFDTPFT KNGKTQGGLE DQWKRRTVLQ TEGSFPALVN RLLVIKSESL
1701: EFSPVENAIG MIETRTAALR NELEEPRSSE GDQLPRLQSL QRILQGSVAV QVNSGVLSVC TAFLSGEPAT RLRSQELQQL IAALLEFMAV CKRAIRVHFR
1801: LIGEEDQDFH TQLVNGFQSL TAELSHYIPA ILSEL
0001: MENNNLGLRF RKLPRQPLAL PKLDPLLDEN LEQWPHLNQL VQCYGTEWVK DVNKYGHYEN IRPDSFQTQI FEGPDTDTET EIRLASARSA TIEEDVASIS
0101: GRPFSDPGSS KHFGQPPLPA YEPAFDWENE RAMIFGQRTP ESPAASYSSG LKISVRVLSL AFQSGLVEPF FGSIALYNQE RKEKLSEDFY FQIQPTEMQD
0201: AKLSSENRGV FYLDAPSASV CLLIQLEKTA TEEGGVTSSV YSRKEPVHLT EREKQKLQVW SRIMPYRESF AWAVVPLFDN NLTTNTGESA SPSSPLAPSM
0301: TASSSHDGVY EPIAKITSDG KQGYSGGSSV VVEISNLNKV KESYSEESIQ DPKRKVHKPV KGVLRLEIEK HRNGHGDFED LSENGSIIND SLDPTDRLSD
0401: LTLMKCPSSS SGGPRNGCSK WNSEDAKDVS RNLTSSCGTP DLNCYHAFDF CSTTRNEPFL HLFHCLYVYP VAVTLSRKRN PFIRVELRKD DTDIRKQPLE
0501: AIYPREPGVS LQKWVHTQVA VGARAASYHD EIKVSLPATW TPSHHLLFTF FHVDLQTKLE APRPVVVGYA SLPLSTYIHS RSDISLPVMR ELVPHYLQES
0601: TKERLDYLED GKNIFKLRLR LCSSLYPTNE RVRDFCLEYD RHTLQTRPPW GSELLQAINS LKHVDSTALL QFLYPILNML LHLIGNGGET LQVAAFRAMV
0701: DILTRVQQVS FDDADRNRFL VTYVDYSFDD FGGNQPPVYP GLATVWGSLA RSKAKGYRVG PVYDDVLSMA WFFLELIVKS MALEQARLYD HNLPTGEDVP
0801: PMQLKESVFR CIMQLFDCLL TEVHERCKKG LSLAKRLNSS LAFFCYDLLY IIEPCQVYEL VSLYMDKFSG VCQSVLHECK LTFLQIISDH DLFVEMPGRD
0901: PSDRNYLSSI LIQELFLSLD HDELPLRAKG ARILVILLCK HEFDARYQKA EDKLYIAQLY FPFVGQILDE MPVFYNLNAT EKREVLIGVL QIVRNLDDTS
1001: LVKAWQQSIA RTRLYFKLME ECLILFEHKK AADSILGGNN SRGPVSEGAG SPKYSERLSP AINNYLSEAS RQEVRLEGTP DNGYLWQRVN SQLASPSQPY
1101: SLREALAQAQ SSRIGASAQA LRESLHPILR QKLELWEENV SATVSLQVLE ITENFSSMAA SHNIATDYGK LDCITTILTS FFSRNQSLAF WKAFFPIFNR
1201: IFDLHGATLM ARENDRFLKQ IAFHLLRLAV YRNDSVRKRA VIGLQILVKS SLYFMQTARL RALLTITLSE LMSDVQVTHM KSDNTLEESG EARRLQQSLS
1301: EMADEAKSVN LLRECGLPDD TLLIIPEKFT ENRWSWAEVK HLSDSLVLAL DASLGHALLG SVMAMDRYAA AESFYKLGMA FAPVPDLHIM WLLHLCDAHQ
1401: EMQSWAEAAQ CAVAVAGVIM QALVARNDGV WSKDHVSALR KICPMVSGEF TTEASAAEVE GYGASKLTVD SAVKYLQLAN KLFSQAELYH FCASILELVI
1501: PVYKSRKAYG QLAKCHTLLT NIYESILDQE SNPIPFIDAT YYRVGFYGEK FGKLDRKEYV YREPRDVRLG DIMEKLSHIY ESRMDSNHIL HIIPDSRQVK
1601: AEDLQAGVCY LQITAVDAVM EDEDLGSRRE RIFSLSTGSV RARVFDRFLF DTPFTKNGKT QGGLEDQWKR RTVLQTEGSF PALVNRLLVT KSESLEFSPV
1701: ENAIGMIETR TTALRNELEE PRSSDGDHLP RLQSLQRILQ GSVAVQVNSG VLSVCTAFLS GEPATRLRSQ ELQQLIAALL EFMAVCKRAI RVHFRLIGEE
1801: DQEFHTQLVN GFQSLTAELS HYIPAILSEL
0101: GRPFSDPGSS KHFGQPPLPA YEPAFDWENE RAMIFGQRTP ESPAASYSSG LKISVRVLSL AFQSGLVEPF FGSIALYNQE RKEKLSEDFY FQIQPTEMQD
0201: AKLSSENRGV FYLDAPSASV CLLIQLEKTA TEEGGVTSSV YSRKEPVHLT EREKQKLQVW SRIMPYRESF AWAVVPLFDN NLTTNTGESA SPSSPLAPSM
0301: TASSSHDGVY EPIAKITSDG KQGYSGGSSV VVEISNLNKV KESYSEESIQ DPKRKVHKPV KGVLRLEIEK HRNGHGDFED LSENGSIIND SLDPTDRLSD
0401: LTLMKCPSSS SGGPRNGCSK WNSEDAKDVS RNLTSSCGTP DLNCYHAFDF CSTTRNEPFL HLFHCLYVYP VAVTLSRKRN PFIRVELRKD DTDIRKQPLE
0501: AIYPREPGVS LQKWVHTQVA VGARAASYHD EIKVSLPATW TPSHHLLFTF FHVDLQTKLE APRPVVVGYA SLPLSTYIHS RSDISLPVMR ELVPHYLQES
0601: TKERLDYLED GKNIFKLRLR LCSSLYPTNE RVRDFCLEYD RHTLQTRPPW GSELLQAINS LKHVDSTALL QFLYPILNML LHLIGNGGET LQVAAFRAMV
0701: DILTRVQQVS FDDADRNRFL VTYVDYSFDD FGGNQPPVYP GLATVWGSLA RSKAKGYRVG PVYDDVLSMA WFFLELIVKS MALEQARLYD HNLPTGEDVP
0801: PMQLKESVFR CIMQLFDCLL TEVHERCKKG LSLAKRLNSS LAFFCYDLLY IIEPCQVYEL VSLYMDKFSG VCQSVLHECK LTFLQIISDH DLFVEMPGRD
0901: PSDRNYLSSI LIQELFLSLD HDELPLRAKG ARILVILLCK HEFDARYQKA EDKLYIAQLY FPFVGQILDE MPVFYNLNAT EKREVLIGVL QIVRNLDDTS
1001: LVKAWQQSIA RTRLYFKLME ECLILFEHKK AADSILGGNN SRGPVSEGAG SPKYSERLSP AINNYLSEAS RQEVRLEGTP DNGYLWQRVN SQLASPSQPY
1101: SLREALAQAQ SSRIGASAQA LRESLHPILR QKLELWEENV SATVSLQVLE ITENFSSMAA SHNIATDYGK LDCITTILTS FFSRNQSLAF WKAFFPIFNR
1201: IFDLHGATLM ARENDRFLKQ IAFHLLRLAV YRNDSVRKRA VIGLQILVKS SLYFMQTARL RALLTITLSE LMSDVQVTHM KSDNTLEESG EARRLQQSLS
1301: EMADEAKSVN LLRECGLPDD TLLIIPEKFT ENRWSWAEVK HLSDSLVLAL DASLGHALLG SVMAMDRYAA AESFYKLGMA FAPVPDLHIM WLLHLCDAHQ
1401: EMQSWAEAAQ CAVAVAGVIM QALVARNDGV WSKDHVSALR KICPMVSGEF TTEASAAEVE GYGASKLTVD SAVKYLQLAN KLFSQAELYH FCASILELVI
1501: PVYKSRKAYG QLAKCHTLLT NIYESILDQE SNPIPFIDAT YYRVGFYGEK FGKLDRKEYV YREPRDVRLG DIMEKLSHIY ESRMDSNHIL HIIPDSRQVK
1601: AEDLQAGVCY LQITAVDAVM EDEDLGSRRE RIFSLSTGSV RARVFDRFLF DTPFTKNGKT QGGLEDQWKR RTVLQTEGSF PALVNRLLVT KSESLEFSPV
1701: ENAIGMIETR TTALRNELEE PRSSDGDHLP RLQSLQRILQ GSVAVQVNSG VLSVCTAFLS GEPATRLRSQ ELQQLIAALL EFMAVCKRAI RVHFRLIGEE
1801: DQEFHTQLVN GFQSLTAELS HYIPAILSEL
Arabidopsis Description
SPK1Guanine nucleotide exchange factor SPIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8SAB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.