CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 3
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00374
KRH03376
KRH13046
KRH24128
KRH28440
KRH29101
KRH40820
KRH43411
KRH52586
KRH54462
KRH57009
KRH61926
KRH63457
KRH65511
KRH76068
KRH77032

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48040.1	KRH52586	AT1G22920.1	21798944
AT3G48040.1	KRH61926	AT1G22920.1	21798944
AT3G48040.1	KRH03376	AT3G48100.1	18642946
AT3G48040.1	KRH54462	AT3G48100.1	18642946
AT3G48040.1	KRH57009	AT3G48100.1	18642946
AT3G48040.1	KRH63457	AT3G48100.1	18642946
AT5G62880.1	KRH52586	AT1G22920.1	21798944
AT5G62880.1	KRH61926	AT1G22920.1	21798944
AT5G62880.1	KRH00374	AT2G38440.1	17267444
AT5G62880.1	KRH40820	AT2G38440.1	17267444
AT5G62880.1	KRH65511	AT2G38440.1	17267444
AT5G62880.1	KRH76068	AT2G38440.1	17267444
AT5G62880.1	KRH13046	AT4G16340.1	17267444
AT5G62880.1	KRH43411	AT4G16340.1	17267444
AT5G62880.1	KRH28440	AT4G36910.1	21798944
AT5G62880.1	KRH77032	AT4G36910.1	21798944
AT5G62880.1	KRH24128	AT4G38430.1	22500990
AT5G62880.1	KRH29101	AT4G38430.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57035	Soybean	cytosol	80.31	97.61
KRH54429	Soybean	cytosol	23.23	90.77
KRH63489	Soybean	cytosol	72.83	87.26
Solyc03g114070.2.1	Tomato	cytosol	71.26	86.19
PGSC0003DMT400063229	Potato	cytosol	71.26	86.19
VIT_17s0000g07890.t01	Wine grape	cytosol	69.69	84.29
TraesCS6D01G288300.1	Wheat	cytosol	70.47	84.04
Bra035878.1-P	Field mustard	cytosol	67.72	83.9
TraesCS6A01G309000.2	Wheat	cytosol	70.08	83.57
KRH54430	Soybean	cytosol	48.03	83.56
AT5G62880.1	Thale cress	cytosol	70.47	83.26
EES05544	Sorghum	cytosol	70.08	83.18
Bra010128.1-P	Field mustard	cytosol	68.11	83.17
AT3G48040.1	Thale cress	cytosol	68.11	83.17
Os02t0742200-01	Rice	cytosol	69.69	82.71
CDY00332	Canola	cytosol	69.69	82.33
CDY56740	Canola	cytosol	69.69	81.94
Bra029240.1-P	Field mustard	cytosol	69.29	81.86
CDY30738	Canola	cytosol	69.29	81.86
CDY45748	Canola	cytosol	68.5	81.69
EER88130	Sorghum	cytosol	68.9	81.4
Os06t0234200-03	Rice	cytosol	68.9	81.4
HORVU6Hr1G076210.5	Barley	cytosol	68.5	80.93
TraesCS6B01G338000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.72	80.75
CDY68200	Canola	cytosol	57.09	80.11
TraesCS7D01G192400.1	Wheat	cytosol	66.93	79.81
TraesCS7B01G096200.1	Wheat	cytosol	66.93	79.81
TraesCS7A01G191400.1	Wheat	cytosol	66.93	79.81
KRH29287	Soybean	cytosol	60.63	78.17
KRH24310	Soybean	cytosol	60.63	78.17
KRH61024	Soybean	cytosol	60.24	78.06
KRH51687	Soybean	cytosol, nucleus, plastid	60.24	77.67
KRH27004	Soybean	cytosol, nucleus, plastid	59.84	77.55
KRH61026	Soybean	cytosol, nucleus, plastid	59.84	77.16
PGSC0003DMT400063227	Potato	cytosol	48.43	76.88
KRH28825	Soybean	cytosol	58.66	75.63
KRH76629	Soybean	cytosol	58.66	75.63
KRH25686	Soybean	cytosol	58.66	75.63
KRH08028	Soybean	cytosol	58.27	75.13
KRH69754	Soybean	cytosol	57.87	74.62
KRH22321	Soybean	cytosol, nucleus, plasma membrane	58.66	74.13
KRH50139	Soybean	cytosol, nucleus, plastid	57.09	73.98
KRH48356	Soybean	cytosol	60.24	72.86
KRH39320	Soybean	cytosol	60.24	72.17
HORVU7Hr1G038980.5	Barley	cytosol	69.29	70.4
Zm00001d052273_P004	Maize	plastid	58.66	68.66
KRH20356	Soybean	cytosol	57.09	68.08
GSMUA_Achr6P36120_001	Banana	cytosol	72.83	66.55
Zm00001d044802_P001	Maize	cytosol	70.47	62.37
KRH55628	Soybean	cytosol	17.32	60.27
KRG90165	Soybean	cytosol	25.98	55.0
Zm00001d018004_P002	Maize	cytosol, peroxisome, plastid	68.11	34.19

Protein Annotations

EntrezGene:100791566	MapMan:27.4.1	Gene3D:3.40.50.300	EMBL:ACUP02010344	EnsemblPlantsGene:GLYMA_17G092100	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	UniProt:K7MKR5	EnsemblPlants:KRH03338
ProteinID:KRH03338	ProteinID:KRH03338.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420
PANTHER:PTHR24072	PANTHER:PTHR24072:SF149	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI000296783A	SEG:seg

Description

hypothetical protein

Coordinates

chr17:+:7165303..7169295

Molecular Weight (calculated)

28387.4 Da

IEP (calculated)

8.942

GRAVY (calculated)

-0.146

Length

254 amino acids

Sequence
(BLAST)

001: MSENHVKCRR VHTHTHSLSL SLNLSVKFNK NTPFVRTCCC CCCSMAATAS RFIKCVTVGD GAVGKTCMLI CYTSNKFPTD YIPTVFDNFS ANVVVENTTV
101: NLGLWDTAGQ EDYNRLRPLS YRGADVFVLA FSLVSHASYE NVLKKWVPEL QHFAPGVPVV LVGTKLDLRE DKHYLADHPG LAPVTSEQGE ELRKLVGATY
201: YIECSSKTQQ NVKSVFDAAI KVVIEPPQKH EKKKKPRRGC LLNVICGRNI VRFK

Best Arabidopsis Sequence Match ( AT3G48040.1 )
(BLAST)

001: MASSASKFIK CVTVGDGAVG KTCMLICYTS NKFPTDYIPT VFDNFSVNVV VEGITVNLGL WDTAGQEDYN RLRPLSYRGA DVFVLAFSLI SRASYENVFK
101: KWIPELQHFA PGVPIVLVGT KMDLREDRHY LSDHPGLSPV TTSQGEELRK HIGATYYIEC SSKTQQNVKA VFDAAIKVVI KPAVKQKEKK KKQKPRSGCL
201: SNILCGKN

Arabidopsis Description

ARAC8ROP10 [Source:UniProtKB/TrEMBL;Acc:A0A178VHB5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.